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AT1G18560


Description : BED zinc finger ;hAT family dimerisation domain


Gene families : OG_01_0000234 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000234_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G18560
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
Pp3c16_20190V3.1 No alias Leucine-rich receptor-like protein kinase family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0000795 synaptonemal complex IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003713 transcription coactivator activity IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006352 DNA-templated transcription, initiation IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
BP GO:0009734 auxin-activated signaling pathway IEP HCCA
BP GO:0009787 regulation of abscisic acid-activated signaling pathway IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010928 regulation of auxin mediated signaling pathway IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0030154 cell differentiation IEP HCCA
BP GO:0030488 tRNA methylation IEP HCCA
BP GO:0031047 gene silencing by RNA IEP HCCA
BP GO:0031537 regulation of anthocyanin metabolic process IEP HCCA
BP GO:0031538 negative regulation of anthocyanin metabolic process IEP HCCA
BP GO:0031935 obsolete regulation of chromatin silencing IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0032784 regulation of DNA-templated transcription, elongation IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0035265 organ growth IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0048530 fruit morphogenesis IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071215 cellular response to abscisic acid stimulus IEP HCCA
BP GO:0071396 cellular response to lipid IEP HCCA
BP GO:0080178 5-carbamoylmethyl uridine residue modification IEP HCCA
BP GO:0080188 gene silencing by RNA-directed DNA methylation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
BP GO:0090698 post-embryonic plant morphogenesis IEP HCCA
BP GO:0097306 cellular response to alcohol IEP HCCA
CC GO:0099086 synaptonemal structure IEP HCCA
BP GO:0140458 pre-transcriptional gene silencing by RNA IEP HCCA
BP GO:1901419 regulation of response to alcohol IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
BP GO:1905957 regulation of cellular response to alcohol IEP HCCA
BP GO:2000024 regulation of leaf development IEP HCCA
InterPro domains Description Start Stop
IPR003656 Znf_BED 56 97
IPR025525 hAT-like_transposase_RNase-H 430 509
IPR008906 HATC_C_dom 569 649
PLAZA 3.0 Dicots AT1G18560