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  5. AT4G19870

AT4G19870


Description : Galactose oxidase/kelch repeat superfamily protein


Gene families : OG_01_0000018 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000018_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G19870
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
AT2G22030 No alias Galactose oxidase/kelch repeat superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G29860 No alias Galactose oxidase/kelch repeat superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G44630 No alias Galactose oxidase/kelch repeat superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G11745 No alias Galactose oxidase/kelch repeat superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G19330 No alias Galactose oxidase/kelch repeat superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G39060 No alias BEST Arabidopsis thaliana protein match is: Galactose... 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G39750 No alias F-box family protein-related 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G02990 No alias Galactose oxidase/kelch repeat superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G03000 No alias Galactose oxidase/kelch repeat superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G39560 No alias Galactose oxidase/kelch repeat superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G48980 No alias Galactose oxidase/kelch repeat superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000018 regulation of DNA recombination IEP HCCA
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
MF GO:0000217 DNA secondary structure binding IEP HCCA
CC GO:0000228 nuclear chromosome IEP HCCA
BP GO:0000373 Group II intron splicing IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
MF GO:0000400 four-way junction DNA binding IEP HCCA
BP GO:0000710 meiotic mismatch repair IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP HCCA
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP HCCA
MF GO:0004300 enoyl-CoA hydratase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0004722 protein serine/threonine phosphatase activity IEP HCCA
CC GO:0005963 magnesium-dependent protein serine/threonine phosphatase complex IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006290 pyrimidine dimer repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
MF GO:0008419 RNA lariat debranching enzyme activity IEP HCCA
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP HCCA
BP GO:0009648 photoperiodism IEP HCCA
BP GO:0009649 entrainment of circadian clock IEP HCCA
MF GO:0016289 CoA hydrolase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016790 thiolester hydrolase activity IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032135 DNA insertion or deletion binding IEP HCCA
MF GO:0032137 guanine/thymine mispair binding IEP HCCA
MF GO:0032138 single base insertion or deletion binding IEP HCCA
CC GO:0032300 mismatch repair complex IEP HCCA
CC GO:0032301 MutSalpha complex IEP HCCA
BP GO:0043153 entrainment of circadian clock by photoperiod IEP HCCA
BP GO:0043570 maintenance of DNA repeat elements IEP HCCA
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP HCCA
BP GO:0045910 negative regulation of DNA recombination IEP HCCA
BP GO:0048573 photoperiodism, flowering IEP HCCA
BP GO:0051053 negative regulation of DNA metabolic process IEP HCCA
BP GO:0097031 obsolete mitochondrial respiratory chain complex I biogenesis IEP HCCA
BP GO:0097034 obsolete mitochondrial respiratory chain complex IV biogenesis IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
CC GO:1990391 DNA repair complex IEP HCCA
InterPro domains Description Start Stop
IPR001810 F-box_dom 28 70
IPR006652 Kelch_1 139 178
IPR006652 Kelch_1 182 226
PLAZA 3.0 Dicots AT4G19870