1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT4G20770

AT4G20770


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0000019 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000019_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G20770
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AT1G68930 No alias pentatricopeptide (PPR) repeat-containing protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G34400 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G03580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G05240 No alias mitochondrial editing factor 19 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G09040 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G15130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G22690 No alias CONTAINS InterPro DOMAIN/s: Protein of unknown function... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G23330 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G25970 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G04370 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G13650 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G18840 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G21300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G33170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G39530 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G16860 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G39680 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G52850 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_16600V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP HCCA
CC GO:0000795 synaptonemal complex IEP HCCA
BP GO:0001933 negative regulation of protein phosphorylation IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
BP GO:0006469 negative regulation of protein kinase activity IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0009292 genetic transfer IEP HCCA
BP GO:0009294 DNA mediated transformation IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0031221 arabinan metabolic process IEP HCCA
BP GO:0033673 negative regulation of kinase activity IEP HCCA
BP GO:0035884 arabinan biosynthetic process IEP HCCA
BP GO:0042326 negative regulation of phosphorylation IEP HCCA
BP GO:0044764 multi-organism cellular process IEP HCCA
BP GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity IEP HCCA
BP GO:0045787 positive regulation of cell cycle IEP HCCA
BP GO:0045931 positive regulation of mitotic cell cycle IEP HCCA
BP GO:0051348 negative regulation of transferase activity IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP HCCA
BP GO:0071901 negative regulation of protein serine/threonine kinase activity IEP HCCA
CC GO:0099086 synaptonemal structure IEP HCCA
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP HCCA
BP GO:1904030 negative regulation of cyclin-dependent protein kinase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 485 510
IPR002885 Pentatricopeptide_repeat 44 70
IPR002885 Pentatricopeptide_repeat 288 313
IPR002885 Pentatricopeptide_repeat 203 244
IPR002885 Pentatricopeptide_repeat 379 428
IPR002885 Pentatricopeptide_repeat 314 360
IPR002885 Pentatricopeptide_repeat 102 150
IPR002885 Pentatricopeptide_repeat 583 631
PLAZA 3.0 Dicots AT4G20770