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AT4G20820


Description : FAD-binding Berberine family protein


Gene families : OG_01_0000138 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G20820
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AT1G26400 No alias FAD-binding Berberine family protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G30700 No alias FAD-binding Berberine family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G30730 No alias FAD-binding Berberine family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G34810 No alias FAD-binding Berberine family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G44410 No alias FAD-binding Berberine family protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G44440 No alias FAD-binding Berberine family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0009055 electron transfer activity ISS Interproscan
CC GO:0009507 chloroplast ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004031 aldehyde oxidase activity IEP HCCA
MF GO:0005451 monovalent cation:proton antiporter activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006714 sesquiterpenoid metabolic process IEP HCCA
BP GO:0006814 sodium ion transport IEP HCCA
BP GO:0006885 regulation of pH IEP HCCA
BP GO:0008284 positive regulation of cell population proliferation IEP HCCA
BP GO:0009687 abscisic acid metabolic process IEP HCCA
BP GO:0009688 abscisic acid biosynthetic process IEP HCCA
BP GO:0009740 gibberellic acid mediated signaling pathway IEP HCCA
BP GO:0010017 red or far-red light signaling pathway IEP HCCA
BP GO:0010043 response to zinc ion IEP HCCA
BP GO:0010074 maintenance of meristem identity IEP HCCA
BP GO:0010099 regulation of photomorphogenesis IEP HCCA
BP GO:0010286 heat acclimation IEP HCCA
BP GO:0010476 gibberellin mediated signaling pathway IEP HCCA
MF GO:0015081 sodium ion transmembrane transporter activity IEP HCCA
MF GO:0015298 solute:cation antiporter activity IEP HCCA
MF GO:0015299 solute:proton antiporter activity IEP HCCA
MF GO:0015385 sodium:proton antiporter activity IEP HCCA
MF GO:0015491 cation:cation antiporter activity IEP HCCA
BP GO:0016106 sesquiterpenoid biosynthetic process IEP HCCA
BP GO:0016145 S-glycoside catabolic process IEP HCCA
MF GO:0016623 oxidoreductase activity, acting on the aldehyde or oxo group of donors, oxygen as acceptor IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0019722 calcium-mediated signaling IEP HCCA
BP GO:0019759 glycosinolate catabolic process IEP HCCA
BP GO:0019762 glucosinolate catabolic process IEP HCCA
BP GO:0019827 stem cell population maintenance IEP HCCA
BP GO:0019932 second-messenger-mediated signaling IEP HCCA
BP GO:0031537 regulation of anthocyanin metabolic process IEP HCCA
BP GO:0031539 positive regulation of anthocyanin metabolic process IEP HCCA
BP GO:0034220 ion transmembrane transport IEP HCCA
BP GO:0035725 sodium ion transmembrane transport IEP HCCA
BP GO:0042752 regulation of circadian rhythm IEP HCCA
BP GO:0042753 positive regulation of circadian rhythm IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043288 apocarotenoid metabolic process IEP HCCA
BP GO:0043289 apocarotenoid biosynthetic process IEP HCCA
BP GO:0044273 sulfur compound catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0050898 nitrile metabolic process IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
MF GO:0051139 metal ion:proton antiporter activity IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0055067 monovalent inorganic cation homeostasis IEP HCCA
BP GO:0071478 cellular response to radiation IEP HCCA
BP GO:0071482 cellular response to light stimulus IEP HCCA
BP GO:0071489 cellular response to red or far red light IEP HCCA
BP GO:0080027 response to herbivore IEP HCCA
BP GO:0080028 nitrile biosynthetic process IEP HCCA
BP GO:0098655 cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
BP GO:0098727 maintenance of cell number IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901658 glycosyl compound catabolic process IEP HCCA
BP GO:1902644 tertiary alcohol metabolic process IEP HCCA
BP GO:1902645 tertiary alcohol biosynthetic process IEP HCCA
BP GO:2000030 regulation of response to red or far red light IEP HCCA
InterPro domains Description Start Stop
IPR006094 Oxid_FAD_bind_N 86 221
IPR012951 BBE 466 524
PLAZA 3.0 Dicots AT4G20820