AT4G21610

Description : lsd one like 2

Gene families : OG_01_0002579 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002579_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G21610
Cluster	HCCA: Cluster_76

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	IEP	Interproscan
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000255	allantoin metabolic process	IEP	HCCA
BP	GO:0000354	cis assembly of pre-catalytic spliceosome	IEP	HCCA
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	HCCA
BP	GO:0001560	regulation of cell growth by extracellular stimulus	IEP	HCCA
BP	GO:0002252	immune effector process	IEP	HCCA
BP	GO:0002679	respiratory burst involved in defense response	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003725	double-stranded RNA binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0003997	acyl-CoA oxidase activity	IEP	HCCA
MF	GO:0004017	adenylate kinase activity	IEP	HCCA
MF	GO:0004551	nucleotide diphosphatase activity	IEP	HCCA
MF	GO:0004605	phosphatidate cytidylyltransferase activity	IEP	HCCA
CC	GO:0005686	U2 snRNP	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006446	regulation of translational initiation	IEP	HCCA
BP	GO:0006606	protein import into nucleus	IEP	HCCA
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	HCCA
BP	GO:0006839	mitochondrial transport	IEP	HCCA
BP	GO:0006855	xenobiotic transmembrane transport	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0009396	folic acid-containing compound biosynthetic process	IEP	HCCA
BP	GO:0010262	somatic embryogenesis	IEP	HCCA
BP	GO:0010501	RNA secondary structure unwinding	IEP	HCCA
CC	GO:0015030	Cajal body	IEP	HCCA
MF	GO:0016634	oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor	IEP	HCCA
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	HCCA
MF	GO:0016812	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides	IEP	HCCA
MF	GO:0016819	hydrolase activity, acting on acid anhydrides, in sulfonyl-containing anhydrides	IEP	HCCA
MF	GO:0017151	DEAD/H-box RNA helicase binding	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019428	allantoin biosynthetic process	IEP	HCCA
CC	GO:0019897	extrinsic component of plasma membrane	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	HCCA
BP	GO:0031099	regeneration	IEP	HCCA
CC	GO:0031234	extrinsic component of cytoplasmic side of plasma membrane	IEP	HCCA
BP	GO:0032392	DNA geometric change	IEP	HCCA
BP	GO:0032508	DNA duplex unwinding	IEP	HCCA
MF	GO:0033971	hydroxyisourate hydrolase activity	IEP	HCCA
BP	GO:0034504	protein localization to nucleus	IEP	HCCA
MF	GO:0035064	methylated histone binding	IEP	HCCA
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	HCCA
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0042908	xenobiotic transport	IEP	HCCA
MF	GO:0043530	adenosine 5'-monophosphoramidase activity	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0045730	respiratory burst	IEP	HCCA
MF	GO:0047627	adenylylsulfatase activity	IEP	HCCA
MF	GO:0047710	bis(5'-adenosyl)-triphosphatase activity	IEP	HCCA
MF	GO:0050145	nucleoside monophosphate kinase activity	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051170	import into nucleus	IEP	HCCA
BP	GO:0051260	protein homooligomerization	IEP	HCCA
BP	GO:0051262	protein tetramerization	IEP	HCCA
BP	GO:0051289	protein homotetramerization	IEP	HCCA
MF	GO:0051997	2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity	IEP	HCCA
MF	GO:0070567	cytidylyltransferase activity	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
MF	GO:0080025	phosphatidylinositol-3,5-bisphosphate binding	IEP	HCCA
BP	GO:0080186	developmental vegetative growth	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
CC	GO:0097525	spliceosomal snRNP complex	IEP	HCCA
CC	GO:0120114	Sm-like protein family complex	IEP	HCCA
MF	GO:0140030	modification-dependent protein binding	IEP	HCCA
MF	GO:0140034	methylation-dependent protein binding	IEP	HCCA
MF	GO:1901981	phosphatidylinositol phosphate binding	IEP	HCCA
MF	GO:1902936	phosphatidylinositol bisphosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005735	Znf_LSD1	101	125
IPR005735	Znf_LSD1	63	87

External Links

PLAZA 3.0 Dicots	AT4G21610

AT4G21610

Expression Profile

Co-expression Networks

Functional Annotation