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AT4G23500


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0000360 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000360_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G23500
Cluster HCCA: Cluster_258

Target Alias Description ECC score Gene Family Method Actions
Pp3c23_13240V3.1 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISS Interproscan
CC GO:0005576 extracellular region ISM Interproscan
CC GO:0005618 cell wall IDA Interproscan
BP GO:0005975 carbohydrate metabolic process ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
MF GO:0004028 3-chloroallyl aldehyde dehydrogenase activity IEP HCCA
MF GO:0004029 aldehyde dehydrogenase (NAD+) activity IEP HCCA
MF GO:0004030 aldehyde dehydrogenase [NAD(P)+] activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0006521 regulation of cellular amino acid metabolic process IEP HCCA
BP GO:0007021 tubulin complex assembly IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
MF GO:0009044 xylan 1,4-beta-xylosidase activity IEP HCCA
BP GO:0009269 response to desiccation IEP HCCA
CC GO:0009505 plant-type cell wall IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
BP GO:0009641 shade avoidance IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010025 wax biosynthetic process IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010166 wax metabolic process IEP HCCA
MF GO:0010326 methionine-oxo-acid transaminase activity IEP HCCA
BP GO:0010364 regulation of ethylene biosynthetic process IEP HCCA
BP GO:0010366 negative regulation of ethylene biosynthetic process IEP HCCA
BP GO:0010411 xyloglucan metabolic process IEP HCCA
BP GO:0010565 regulation of cellular ketone metabolic process IEP HCCA
BP GO:0010600 regulation of auxin biosynthetic process IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
MF GO:0017022 myosin binding IEP HCCA
CC GO:0030054 cell junction IEP HCCA
MF GO:0030570 pectate lyase activity IEP HCCA
MF GO:0030742 GTP-dependent protein binding IEP HCCA
BP GO:0031335 regulation of sulfur amino acid metabolic process IEP HCCA
BP GO:0031336 negative regulation of sulfur amino acid metabolic process IEP HCCA
MF GO:0032029 myosin tail binding IEP HCCA
MF GO:0032036 myosin heavy chain binding IEP HCCA
BP GO:0032350 regulation of hormone metabolic process IEP HCCA
BP GO:0032351 negative regulation of hormone metabolic process IEP HCCA
BP GO:0032353 negative regulation of hormone biosynthetic process IEP HCCA
BP GO:0033238 regulation of cellular amine metabolic process IEP HCCA
BP GO:0033239 negative regulation of cellular amine metabolic process IEP HCCA
BP GO:0042762 regulation of sulfur metabolic process IEP HCCA
BP GO:0044347 cell wall polysaccharide catabolic process IEP HCCA
BP GO:0045493 xylan catabolic process IEP HCCA
BP GO:0045763 negative regulation of cellular amino acid metabolic process IEP HCCA
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP HCCA
BP GO:0046885 regulation of hormone biosynthetic process IEP HCCA
CC GO:0048046 apoplast IEP HCCA
BP GO:0051175 negative regulation of sulfur metabolic process IEP HCCA
BP GO:0062012 regulation of small molecule metabolic process IEP HCCA
BP GO:0062014 negative regulation of small molecule metabolic process IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
MF GO:0080115 myosin XI tail binding IEP HCCA
MF GO:0080176 xyloglucan 1,6-alpha-xylosidase activity IEP HCCA
BP GO:0090354 regulation of auxin metabolic process IEP HCCA
BP GO:0090356 negative regulation of auxin metabolic process IEP HCCA
BP GO:0090357 regulation of tryptophan metabolic process IEP HCCA
MF GO:0097599 xylanase activity IEP HCCA
BP GO:1900908 regulation of olefin metabolic process IEP HCCA
BP GO:1900909 negative regulation of olefin metabolic process IEP HCCA
BP GO:1900911 regulation of olefin biosynthetic process IEP HCCA
BP GO:1900912 negative regulation of olefin biosynthetic process IEP HCCA
BP GO:1901568 fatty acid derivative metabolic process IEP HCCA
BP GO:1901570 fatty acid derivative biosynthetic process IEP HCCA
BP GO:1901996 regulation of indoleacetic acid biosynthetic process via tryptophan IEP HCCA
BP GO:1901997 negative regulation of indoleacetic acid biosynthetic process via tryptophan IEP HCCA
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 166 445
PLAZA 3.0 Dicots AT4G23500