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AT4G24440


Description : transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)


Gene families : OG_01_0003635 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0003635_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G24440
Cluster HCCA: Cluster_203

Target Alias Description ECC score Gene Family Method Actions
Pp3c15_13540V3.1 No alias transcription initiation factor IIA gamma chain /... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation RCA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005672 transcription factor TFIIA complex ISS Interproscan
BP GO:0006366 transcription by RNA polymerase II RCA Interproscan
BP GO:0006367 transcription initiation from RNA polymerase II promoter ISS Interproscan
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Type GO Term Name Evidence Source
CC GO:0000418 RNA polymerase IV complex IEP HCCA
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005665 RNA polymerase II, core complex IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
CC GO:0005887 integral component of plasma membrane IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006301 postreplication repair IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0007021 tubulin complex assembly IEP HCCA
MF GO:0008131 primary amine oxidase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009788 negative regulation of abscisic acid-activated signaling pathway IEP HCCA
BP GO:0009823 cytokinin catabolic process IEP HCCA
BP GO:0009958 positive gravitropism IEP HCCA
BP GO:0010025 wax biosynthetic process IEP HCCA
BP GO:0010166 wax metabolic process IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0019139 cytokinin dehydrogenase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
CC GO:0031371 ubiquitin conjugating enzyme complex IEP HCCA
CC GO:0031372 UBC13-MMS2 complex IEP HCCA
CC GO:0031965 nuclear membrane IEP HCCA
MF GO:0035064 methylated histone binding IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0042447 hormone catabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
MF GO:0140030 modification-dependent protein binding IEP HCCA
MF GO:0140034 methylation-dependent protein binding IEP HCCA
BP GO:1901420 negative regulation of response to alcohol IEP HCCA
BP GO:1901568 fatty acid derivative metabolic process IEP HCCA
BP GO:1901570 fatty acid derivative biosynthetic process IEP HCCA
BP GO:1905958 negative regulation of cellular response to alcohol IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR015871 TFIIA_gsu_C 59 101
IPR015872 TFIIA_gsu_N 4 49
PLAZA 3.0 Dicots AT4G24440