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  5. AT4G24550

AT4G24550


Description : Clathrin adaptor complexes medium subunit family protein


Gene families : OG_01_0006030 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0006030_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G24550
Cluster HCCA: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
Cre02.g146600 No alias Vesicle trafficking.endomembrane trafficking.vacuolar... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0006623 protein targeting to vacuole RCA Interproscan
BP GO:0006886 intracellular protein transport ISS Interproscan
CC GO:0030125 clathrin vesicle coat ISS Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003756 protein disulfide isomerase activity IEP HCCA
MF GO:0004559 alpha-mannosidase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005768 endosome IEP HCCA
CC GO:0005774 vacuolar membrane IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
CC GO:0005794 Golgi apparatus IEP HCCA
CC GO:0005802 trans-Golgi network IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006464 cellular protein modification process IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006491 N-glycan processing IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
BP GO:0006897 endocytosis IEP HCCA
BP GO:0007032 endosome organization IEP HCCA
BP GO:0007033 vacuole organization IEP HCCA
BP GO:0007160 cell-matrix adhesion IEP HCCA
CC GO:0008305 integrin complex IEP HCCA
MF GO:0008417 fucosyltransferase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009100 glycoprotein metabolic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009306 protein secretion IEP HCCA
CC GO:0009504 cell plate IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
BP GO:0009900 dehiscence IEP HCCA
BP GO:0009901 anther dehiscence IEP HCCA
BP GO:0010208 pollen wall assembly IEP HCCA
BP GO:0010417 glucuronoxylan biosynthetic process IEP HCCA
MF GO:0010427 abscisic acid binding IEP HCCA
BP GO:0010584 pollen exine formation IEP HCCA
BP GO:0010927 cellular component assembly involved in morphogenesis IEP HCCA
CC GO:0012506 vesicle membrane IEP HCCA
CC GO:0012510 trans-Golgi network transport vesicle membrane IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
CC GO:0016021 integral component of membrane IEP HCCA
BP GO:0016050 vesicle organization IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016864 intramolecular oxidoreductase activity, transposing S-S bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0019840 isoprenoid binding IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0019901 protein kinase binding IEP HCCA
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
MF GO:0030276 clathrin binding IEP HCCA
CC GO:0030658 transport vesicle membrane IEP HCCA
CC GO:0030659 cytoplasmic vesicle membrane IEP HCCA
CC GO:0030660 Golgi-associated vesicle membrane IEP HCCA
CC GO:0030662 coated vesicle membrane IEP HCCA
CC GO:0030665 clathrin-coated vesicle membrane IEP HCCA
BP GO:0030968 endoplasmic reticulum unfolded protein response IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP HCCA
MF GO:0031406 carboxylic acid binding IEP HCCA
CC GO:0031410 cytoplasmic vesicle IEP HCCA
BP GO:0031589 cell-substrate adhesion IEP HCCA
CC GO:0031982 vesicle IEP HCCA
CC GO:0031984 organelle subcompartment IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
MF GO:0033293 monocarboxylic acid binding IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0035592 establishment of protein localization to extracellular region IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
CC GO:0042175 nuclear outer membrane-endoplasmic reticulum membrane network IEP HCCA
MF GO:0042285 xylosyltransferase activity IEP HCCA
MF GO:0042562 hormone binding IEP HCCA
BP GO:0042732 D-xylose metabolic process IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043177 organic acid binding IEP HCCA
MF GO:0043178 alcohol binding IEP HCCA
CC GO:0043235 receptor complex IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
MF GO:0043424 protein histidine kinase binding IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0046903 secretion IEP HCCA
MF GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity IEP HCCA
MF GO:0048040 UDP-glucuronate decarboxylase activity IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048364 root development IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0070070 proton-transporting V-type ATPase complex assembly IEP HCCA
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071692 protein localization to extracellular region IEP HCCA
BP GO:0080171 lytic vacuole organization IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0097708 intracellular vesicle IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0098636 protein complex involved in cell adhesion IEP HCCA
CC GO:0098791 Golgi apparatus subcompartment IEP HCCA
CC GO:0098802 plasma membrane signaling receptor complex IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1990019 protein storage vacuole organization IEP HCCA
InterPro domains Description Start Stop
IPR028565 MHD 184 374
IPR022775 AP_mu_sigma_su 2 133
PLAZA 3.0 Dicots AT4G24550