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AT1G19170


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0000360 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000360_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G19170
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
AT3G06770 No alias Pectin lyase-like superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G23820 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c19_14240V3.1 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISS Interproscan
BP GO:0005975 carbohydrate metabolic process ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
BP GO:0000097 sulfur amino acid biosynthetic process IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0003002 regionalization IEP HCCA
MF GO:0003846 2-acylglycerol O-acyltransferase activity IEP HCCA
MF GO:0003878 ATP citrate synthase activity IEP HCCA
MF GO:0004478 methionine adenosyltransferase activity IEP HCCA
MF GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity IEP HCCA
MF GO:0004568 chitinase activity IEP HCCA
MF GO:0004622 lysophospholipase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005794 Golgi apparatus IEP HCCA
CC GO:0005885 Arp2/3 protein complex IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006084 acetyl-CoA metabolic process IEP HCCA
BP GO:0006085 acetyl-CoA biosynthetic process IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006534 cysteine metabolic process IEP HCCA
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP HCCA
BP GO:0006637 acyl-CoA metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006833 water transport IEP HCCA
BP GO:0006972 hyperosmotic response IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
BP GO:0007030 Golgi organization IEP HCCA
BP GO:0007155 cell adhesion IEP HCCA
BP GO:0007389 pattern specification process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0008361 regulation of cell size IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009070 serine family amino acid biosynthetic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
CC GO:0009346 ATP-independent citrate lyase complex IEP HCCA
BP GO:0009698 phenylpropanoid metabolic process IEP HCCA
BP GO:0009699 phenylpropanoid biosynthetic process IEP HCCA
BP GO:0009804 coumarin metabolic process IEP HCCA
BP GO:0009805 coumarin biosynthetic process IEP HCCA
BP GO:0009808 lignin metabolic process IEP HCCA
BP GO:0009809 lignin biosynthetic process IEP HCCA
BP GO:0009825 multidimensional cell growth IEP HCCA
BP GO:0009832 plant-type cell wall biogenesis IEP HCCA
BP GO:0009834 plant-type secondary cell wall biogenesis IEP HCCA
BP GO:0009888 tissue development IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0009900 dehiscence IEP HCCA
BP GO:0009914 hormone transport IEP HCCA
BP GO:0009926 auxin polar transport IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010015 root morphogenesis IEP HCCA
BP GO:0010016 shoot system morphogenesis IEP HCCA
BP GO:0010047 fruit dehiscence IEP HCCA
BP GO:0010051 xylem and phloem pattern formation IEP HCCA
BP GO:0010087 phloem or xylem histogenesis IEP HCCA
BP GO:0010089 xylem development IEP HCCA
BP GO:0010115 regulation of abscisic acid biosynthetic process IEP HCCA
BP GO:0010116 positive regulation of abscisic acid biosynthetic process IEP HCCA
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP HCCA
BP GO:0010337 regulation of salicylic acid metabolic process IEP HCCA
BP GO:0010383 cell wall polysaccharide metabolic process IEP HCCA
BP GO:0010395 rhamnogalacturonan I metabolic process IEP HCCA
BP GO:0010400 rhamnogalacturonan I side chain metabolic process IEP HCCA
BP GO:0010410 hemicellulose metabolic process IEP HCCA
BP GO:0010413 glucuronoxylan metabolic process IEP HCCA
BP GO:0010417 glucuronoxylan biosynthetic process IEP HCCA
MF GO:0010488 UDP-galactose:N-glycan beta-1,3-galactosyltransferase activity IEP HCCA
BP GO:0010493 Lewis a epitope biosynthetic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010565 regulation of cellular ketone metabolic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
MF GO:0015020 glucuronosyltransferase activity IEP HCCA
CC GO:0015630 microtubule cytoskeleton IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016411 acylglycerol O-acyltransferase activity IEP HCCA
MF GO:0016413 O-acetyltransferase activity IEP HCCA
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
BP GO:0016926 protein desumoylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0019344 cysteine biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0019747 regulation of isoprenoid metabolic process IEP HCCA
BP GO:0019748 secondary metabolic process IEP HCCA
BP GO:0022610 biological adhesion IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:0030775 glucuronoxylan 4-O-methyltransferase activity IEP HCCA
MF GO:0031176 endo-1,4-beta-xylanase activity IEP HCCA
CC GO:0031224 intrinsic component of membrane IEP HCCA
CC GO:0031225 anchored component of membrane IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0032535 regulation of cellular component size IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0035250 UDP-galactosyltransferase activity IEP HCCA
BP GO:0035383 thioester metabolic process IEP HCCA
BP GO:0035384 thioester biosynthetic process IEP HCCA
BP GO:0042044 fluid transport IEP HCCA
BP GO:0042546 cell wall biogenesis IEP HCCA
BP GO:0042743 hydrogen peroxide metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043455 regulation of secondary metabolic process IEP HCCA
BP GO:0043473 pigmentation IEP HCCA
BP GO:0043476 pigment accumulation IEP HCCA
BP GO:0043478 pigment accumulation in response to UV light IEP HCCA
BP GO:0043479 pigment accumulation in tissues in response to UV light IEP HCCA
BP GO:0043480 pigment accumulation in tissues IEP HCCA
BP GO:0043481 anthocyanin accumulation in tissues in response to UV light IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044038 cell wall macromolecule biosynthetic process IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044087 regulation of cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0044550 secondary metabolite biosynthetic process IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0045491 xylan metabolic process IEP HCCA
BP GO:0045492 xylan biosynthetic process IEP HCCA
BP GO:0045828 positive regulation of isoprenoid metabolic process IEP HCCA
BP GO:0045834 positive regulation of lipid metabolic process IEP HCCA
BP GO:0045893 positive regulation of transcription, DNA-templated IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046500 S-adenosylmethionine metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0046889 positive regulation of lipid biosynthetic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
MF GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity IEP HCCA
BP GO:0048439 flower morphogenesis IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048609 multicellular organismal reproductive process IEP HCCA
BP GO:0048767 root hair elongation IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0050665 hydrogen peroxide biosynthetic process IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0060918 auxin transport IEP HCCA
BP GO:0062012 regulation of small molecule metabolic process IEP HCCA
BP GO:0062013 positive regulation of small molecule metabolic process IEP HCCA
BP GO:0070589 cellular component macromolecule biosynthetic process IEP HCCA
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071616 acyl-CoA biosynthetic process IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
MF GO:0080116 glucuronoxylan glucuronosyltransferase activity IEP HCCA
BP GO:0090066 regulation of anatomical structure size IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
MF GO:0097599 xylanase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1900376 regulation of secondary metabolite biosynthetic process IEP HCCA
BP GO:1900378 positive regulation of secondary metabolite biosynthetic process IEP HCCA
BP GO:1901141 regulation of lignin biosynthetic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901428 regulation of syringal lignin biosynthetic process IEP HCCA
BP GO:1901430 positive regulation of syringal lignin biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1902930 regulation of alcohol biosynthetic process IEP HCCA
BP GO:1902932 positive regulation of alcohol biosynthetic process IEP HCCA
BP GO:1903338 regulation of cell wall organization or biogenesis IEP HCCA
BP GO:1903409 reactive oxygen species biosynthetic process IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2000652 regulation of secondary cell wall biogenesis IEP HCCA
BP GO:2000762 regulation of phenylpropanoid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 184 466
PLAZA 3.0 Dicots AT1G19170