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  5. AT4G29820

AT4G29820


Description : homolog of CFIM-25


Gene families : OG_01_0017673 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G29820
Cluster HCCA: Cluster_244


Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0010260 animal organ senescence RCA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000323 lytic vacuole IEP HCCA
CC GO:0000813 ESCRT I complex IEP HCCA
BP GO:0002684 positive regulation of immune system process IEP HCCA
BP GO:0002833 positive regulation of response to biotic stimulus IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006624 vacuolar protein processing IEP HCCA
BP GO:0006787 porphyrin-containing compound catabolic process IEP HCCA
BP GO:0006817 phosphate ion transport IEP HCCA
BP GO:0009267 cellular response to starvation IEP HCCA
BP GO:0009626 plant-type hypersensitive response IEP HCCA
BP GO:0009639 response to red or far red light IEP HCCA
BP GO:0009890 negative regulation of biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009967 positive regulation of signal transduction IEP HCCA
BP GO:0009991 response to extracellular stimulus IEP HCCA
BP GO:0010337 regulation of salicylic acid metabolic process IEP HCCA
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010565 regulation of cellular ketone metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010647 positive regulation of cell communication IEP HCCA
BP GO:0010942 positive regulation of cell death IEP HCCA
CC GO:0015030 Cajal body IEP HCCA
BP GO:0015996 chlorophyll catabolic process IEP HCCA
BP GO:0016036 cellular response to phosphate starvation IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016485 protein processing IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016602 CCAAT-binding factor complex IEP HCCA
CC GO:0016604 nuclear body IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0023056 positive regulation of signaling IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
BP GO:0031327 negative regulation of cellular biosynthetic process IEP HCCA
BP GO:0031349 positive regulation of defense response IEP HCCA
BP GO:0031667 response to nutrient levels IEP HCCA
BP GO:0031668 cellular response to extracellular stimulus IEP HCCA
BP GO:0031669 cellular response to nutrient levels IEP HCCA
BP GO:0032103 positive regulation of response to external stimulus IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0033015 tetrapyrrole catabolic process IEP HCCA
BP GO:0034050 programmed cell death induced by symbiont IEP HCCA
BP GO:0034052 positive regulation of plant-type hypersensitive response IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
BP GO:0042594 response to starvation IEP HCCA
BP GO:0042752 regulation of circadian rhythm IEP HCCA
BP GO:0042991 obsolete transcription factor import into nucleus IEP HCCA
BP GO:0043068 positive regulation of programmed cell death IEP HCCA
BP GO:0044403 biological process involved in symbiotic interaction IEP HCCA
BP GO:0045089 positive regulation of innate immune response IEP HCCA
BP GO:0045892 negative regulation of transcription, DNA-templated IEP HCCA
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0046149 pigment catabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0048571 long-day photoperiodism IEP HCCA
BP GO:0048574 long-day photoperiodism, flowering IEP HCCA
BP GO:0048584 positive regulation of response to stimulus IEP HCCA
BP GO:0050778 positive regulation of immune response IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051253 negative regulation of RNA metabolic process IEP HCCA
BP GO:0051702 biological process involved in interaction with symbiont IEP HCCA
BP GO:0062012 regulation of small molecule metabolic process IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071496 cellular response to external stimulus IEP HCCA
BP GO:0080021 response to benzoic acid IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1900457 regulation of brassinosteroid mediated signaling pathway IEP HCCA
BP GO:1900459 positive regulation of brassinosteroid mediated signaling pathway IEP HCCA
BP GO:1902679 negative regulation of RNA biosynthetic process IEP HCCA
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR016706 Cleav_polyA_spec_factor_su5 29 215
PLAZA 3.0 Dicots AT4G29820