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AT1G19860


Description : Zinc finger C-x8-C-x5-C-x3-H type family protein


Gene families : OG_01_0005180 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0005180_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G19860
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Mp7g15780.1 No alias C3H zinc finger transcription factor 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000059 obsolete protein import into nucleus, docking IEP HCCA
MF GO:0000217 DNA secondary structure binding IEP HCCA
CC GO:0000228 nuclear chromosome IEP HCCA
MF GO:0000404 heteroduplex DNA loop binding IEP HCCA
BP GO:0000710 meiotic mismatch repair IEP HCCA
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003983 UTP:glucose-1-phosphate uridylyltransferase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004835 tubulin-tyrosine ligase activity IEP HCCA
CC GO:0005635 nuclear envelope IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006011 UDP-glucose metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006323 DNA packaging IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006346 DNA methylation-dependent heterochromatin assembly IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007129 homologous chromosome pairing at meiosis IEP HCCA
BP GO:0007131 reciprocal meiotic recombination IEP HCCA
CC GO:0008278 cohesin complex IEP HCCA
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP HCCA
BP GO:0010032 meiotic chromosome condensation IEP HCCA
BP GO:0010424 DNA methylation on cytosine within a CG sequence IEP HCCA
MF GO:0010428 methyl-CpNpG binding IEP HCCA
MF GO:0010429 methyl-CpNpN binding IEP HCCA
MF GO:0010491 UTP:arabinose-1-phosphate uridylyltransferase activity IEP HCCA
BP GO:0010528 regulation of transposition IEP HCCA
BP GO:0010529 negative regulation of transposition IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP HCCA
MF GO:0017103 UTP:galactose-1-phosphate uridylyltransferase activity IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0030261 chromosome condensation IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0031047 gene silencing by RNA IEP HCCA
BP GO:0031445 regulation of heterochromatin assembly IEP HCCA
BP GO:0031453 positive regulation of heterochromatin assembly IEP HCCA
BP GO:0031507 heterochromatin assembly IEP HCCA
MF GO:0032135 DNA insertion or deletion binding IEP HCCA
CC GO:0032300 mismatch repair complex IEP HCCA
BP GO:0032776 DNA methylation on cytosine IEP HCCA
BP GO:0033233 regulation of protein sumoylation IEP HCCA
BP GO:0033234 negative regulation of protein sumoylation IEP HCCA
BP GO:0033356 UDP-L-arabinose metabolic process IEP HCCA
MF GO:0035197 siRNA binding IEP HCCA
BP GO:0035825 homologous recombination IEP HCCA
BP GO:0040029 regulation of gene expression, epigenetic IEP HCCA
BP GO:0043570 maintenance of DNA repeat elements IEP HCCA
BP GO:0043687 post-translational protein modification IEP HCCA
BP GO:0044089 positive regulation of cellular component biogenesis IEP HCCA
BP GO:0045003 double-strand break repair via synthesis-dependent strand annealing IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0046398 UDP-glucuronate metabolic process IEP HCCA
MF GO:0047338 UTP:xylose-1-phosphate uridylyltransferase activity IEP HCCA
MF GO:0047350 glucuronate-1-phosphate uridylyltransferase activity IEP HCCA
BP GO:0048443 stamen development IEP HCCA
BP GO:0048481 plant ovule development IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051026 chiasma assembly IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051177 meiotic sister chromatid cohesion IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051316 attachment of spindle microtubules to kinetochore involved in meiotic chromosome segregation IEP HCCA
BP GO:0051455 monopolar spindle attachment to meiosis I kinetochore IEP HCCA
MF GO:0051748 UTP-monosaccharide-1-phosphate uridylyltransferase activity IEP HCCA
BP GO:0051754 meiotic sister chromatid cohesion, centromeric IEP HCCA
BP GO:0052573 UDP-D-galactose metabolic process IEP HCCA
BP GO:0060341 regulation of cellular localization IEP HCCA
MF GO:0061980 regulatory RNA binding IEP HCCA
BP GO:0061982 meiosis I cell cycle process IEP HCCA
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP HCCA
MF GO:0070569 uridylyltransferase activity IEP HCCA
BP GO:0070601 centromeric sister chromatid cohesion IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0080154 regulation of fertilization IEP HCCA
BP GO:0080155 regulation of double fertilization forming a zygote and endosperm IEP HCCA
BP GO:0080188 gene silencing by RNA-directed DNA methylation IEP HCCA
BP GO:0090308 regulation of DNA methylation-dependent heterochromatin assembly IEP HCCA
BP GO:0090309 positive regulation of DNA methylation-dependent heterochromatin assembly IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
BP GO:0120261 regulation of heterochromatin organization IEP HCCA
BP GO:0120263 positive regulation of heterochromatin organization IEP HCCA
BP GO:0140458 pre-transcriptional gene silencing by RNA IEP HCCA
BP GO:0140527 reciprocal homologous recombination IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1902275 regulation of chromatin organization IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
BP GO:1903320 regulation of protein modification by small protein conjugation or removal IEP HCCA
BP GO:1903321 negative regulation of protein modification by small protein conjugation or removal IEP HCCA
BP GO:1905269 positive regulation of chromatin organization IEP HCCA
CC GO:1990391 DNA repair complex IEP HCCA
BP GO:2000008 regulation of protein localization to cell surface IEP HCCA
BP GO:2001252 positive regulation of chromosome organization IEP HCCA

No InterPro domains available for this sequence

PLAZA 3.0 Dicots AT1G19860