AT1G19890

Description : male-gamete-specific histone H3

Gene families : OG_01_0000031 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000031_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G19890
Cluster	HCCA: Cluster_268

Target	Alias	Description	ECC score	Gene Family Method
Cre06.g265250	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g266650	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g267950	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g274000	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g274101	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g274350	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g274850	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g275750	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g276600	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g276850	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre12.g504650	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre12.g504800	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre12.g505500	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre12.g506300	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre12.g506500	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre13.g569950	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre16.g650300	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g708150	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g708700	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g709050	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g710550	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g711850	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g713950	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g714650	No alias	Chromatin organisation.histones.H3-type histone	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp3g09090.1	No alias	histone (H3)	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c22_8680V3.1	No alias	Histone superfamily protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_37020V3.1	No alias	Histone superfamily protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009566	fertilization	None	Extended
BP	GO:0009567	double fertilization forming a zygote and endosperm	IEP	Interproscan
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009664	plant-type cell wall organization	None	Extended
BP	GO:0009826	unidimensional cell growth	None	Extended
BP	GO:0009827	plant-type cell wall modification	RCA	Interproscan
BP	GO:0009860	pollen tube growth	RCA	Interproscan
BP	GO:0009932	cell tip growth	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042545	cell wall modification	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0048235	pollen sperm cell differentiation	IEP	Interproscan
CC	GO:0048555	generative cell nucleus	IDA	Interproscan
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000719	photoreactive repair	IEP	HCCA
CC	GO:0000808	origin recognition complex	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0003913	DNA photolyase activity	IEP	HCCA
MF	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	IEP	HCCA
CC	GO:0005887	integral component of plasma membrane	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006289	nucleotide-excision repair	IEP	HCCA
BP	GO:0006290	pyrimidine dimer repair	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0008219	cell death	IEP	HCCA
MF	GO:0008474	palmitoyl-(protein) hydrolase activity	IEP	HCCA
BP	GO:0009186	deoxyribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009650	UV protection	IEP	HCCA
CC	GO:0009898	cytoplasmic side of plasma membrane	IEP	HCCA
BP	GO:0010098	suspensor development	IEP	HCCA
BP	GO:0010466	negative regulation of peptidase activity	IEP	HCCA
BP	GO:0010951	negative regulation of endopeptidase activity	IEP	HCCA
MF	GO:0015204	urea transmembrane transporter activity	IEP	HCCA
BP	GO:0015840	urea transport	IEP	HCCA
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	HCCA
MF	GO:0016728	oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor	IEP	HCCA
BP	GO:0019755	one-carbon compound transport	IEP	HCCA
BP	GO:0030162	regulation of proteolysis	IEP	HCCA
MF	GO:0032442	phenylcoumaran benzylic ether reductase activity	IEP	HCCA
BP	GO:0045861	negative regulation of proteolysis	IEP	HCCA
BP	GO:0048598	embryonic morphogenesis	IEP	HCCA
BP	GO:0051346	negative regulation of hydrolase activity	IEP	HCCA
BP	GO:0051865	protein autoubiquitination	IEP	HCCA
BP	GO:0052547	regulation of peptidase activity	IEP	HCCA
BP	GO:0052548	regulation of endopeptidase activity	IEP	HCCA
MF	GO:0061731	ribonucleoside-diphosphate reductase activity	IEP	HCCA
BP	GO:0080159	zygote elongation	IEP	HCCA
CC	GO:0098552	side of membrane	IEP	HCCA
CC	GO:0098562	cytoplasmic side of membrane	IEP	HCCA
MF	GO:0098599	palmitoyl hydrolase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007125	Histone_H2A/H2B/H3	1	133

External Links

PLAZA 3.0 Dicots	AT1G19890

AT1G19890

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation