AT4G34530

Description : cryptochrome-interacting basic-helix-loop-helix 1

Gene families : OG_01_0000168 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000168_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G34530
Cluster	HCCA: Cluster_42

Target	Alias	Description	ECC score	Gene Family Method
AT1G25330	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G50915	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G62610	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_24040V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_7710V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_2660V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IDA	Interproscan
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IDA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IDA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009909	regulation of flower development	None	Extended
BP	GO:0009911	positive regulation of flower development	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048582	positive regulation of post-embryonic development	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0051094	positive regulation of developmental process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051240	positive regulation of multicellular organismal process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended
BP	GO:2000243	positive regulation of reproductive process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000038	very long-chain fatty acid metabolic process	IEP	HCCA
CC	GO:0000139	Golgi membrane	IEP	HCCA
BP	GO:0000578	embryonic axis specification	IEP	HCCA
MF	GO:0004871	obsolete signal transducer activity	IEP	HCCA
MF	GO:0005496	steroid binding	IEP	HCCA
CC	GO:0005789	endoplasmic reticulum membrane	IEP	HCCA
BP	GO:0005986	sucrose biosynthetic process	IEP	HCCA
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	HCCA
BP	GO:0006633	fatty acid biosynthetic process	IEP	HCCA
MF	GO:0008142	oxysterol binding	IEP	HCCA
MF	GO:0008146	sulfotransferase activity	IEP	HCCA
BP	GO:0008356	asymmetric cell division	IEP	HCCA
BP	GO:0008361	regulation of cell size	IEP	HCCA
BP	GO:0009314	response to radiation	IEP	HCCA
BP	GO:0009411	response to UV	IEP	HCCA
BP	GO:0009416	response to light stimulus	IEP	HCCA
BP	GO:0009593	detection of chemical stimulus	IEP	HCCA
BP	GO:0009606	tropism	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009629	response to gravity	IEP	HCCA
BP	GO:0009630	gravitropism	IEP	HCCA
BP	GO:0009637	response to blue light	IEP	HCCA
BP	GO:0009638	phototropism	IEP	HCCA
BP	GO:0009639	response to red or far red light	IEP	HCCA
BP	GO:0009641	shade avoidance	IEP	HCCA
MF	GO:0009672	auxin:proton symporter activity	IEP	HCCA
BP	GO:0009699	phenylpropanoid biosynthetic process	IEP	HCCA
BP	GO:0009704	de-etiolation	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009720	detection of hormone stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009726	detection of endogenous stimulus	IEP	HCCA
BP	GO:0009727	detection of ethylene stimulus	IEP	HCCA
BP	GO:0009733	response to auxin	IEP	HCCA
BP	GO:0009740	gibberellic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009741	response to brassinosteroid	IEP	HCCA
BP	GO:0009785	blue light signaling pathway	IEP	HCCA
BP	GO:0009798	axis specification	IEP	HCCA
MF	GO:0009815	1-aminocyclopropane-1-carboxylate oxidase activity	IEP	HCCA
BP	GO:0009825	multidimensional cell growth	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0009914	hormone transport	IEP	HCCA
BP	GO:0009926	auxin polar transport	IEP	HCCA
BP	GO:0009932	cell tip growth	IEP	HCCA
BP	GO:0009942	longitudinal axis specification	IEP	HCCA
BP	GO:0009959	negative gravitropism	IEP	HCCA
BP	GO:0009966	regulation of signal transduction	IEP	HCCA
CC	GO:0009986	cell surface	IEP	HCCA
BP	GO:0010015	root morphogenesis	IEP	HCCA
BP	GO:0010017	red or far-red light signaling pathway	IEP	HCCA
BP	GO:0010029	regulation of seed germination	IEP	HCCA
BP	GO:0010030	positive regulation of seed germination	IEP	HCCA
BP	GO:0010033	response to organic substance	IEP	HCCA
BP	GO:0010082	regulation of root meristem growth	IEP	HCCA
BP	GO:0010100	negative regulation of photomorphogenesis	IEP	HCCA
BP	GO:0010114	response to red light	IEP	HCCA
BP	GO:0010161	red light signaling pathway	IEP	HCCA
BP	GO:0010187	negative regulation of seed germination	IEP	HCCA
BP	GO:0010218	response to far red light	IEP	HCCA
MF	GO:0010296	prenylcysteine methylesterase activity	IEP	HCCA
MF	GO:0010313	phytochrome binding	IEP	HCCA
BP	GO:0010315	auxin efflux	IEP	HCCA
MF	GO:0010329	auxin efflux transmembrane transporter activity	IEP	HCCA
BP	GO:0010345	suberin biosynthetic process	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010476	gibberellin mediated signaling pathway	IEP	HCCA
BP	GO:0010500	transmitting tissue development	IEP	HCCA
BP	GO:0010541	acropetal auxin transport	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010646	regulation of cell communication	IEP	HCCA
BP	GO:0010817	regulation of hormone levels	IEP	HCCA
BP	GO:0010928	regulation of auxin mediated signaling pathway	IEP	HCCA
CC	GO:0012506	vesicle membrane	IEP	HCCA
BP	GO:0014070	response to organic cyclic compound	IEP	HCCA
MF	GO:0015293	symporter activity	IEP	HCCA
MF	GO:0015294	solute:cation symporter activity	IEP	HCCA
MF	GO:0015295	solute:proton symporter activity	IEP	HCCA
CC	GO:0015629	actin cytoskeleton	IEP	HCCA
CC	GO:0016328	lateral plasma membrane	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0023051	regulation of signaling	IEP	HCCA
BP	GO:0030497	fatty acid elongation	IEP	HCCA
BP	GO:0030522	intracellular receptor signaling pathway	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0031539	positive regulation of anthocyanin metabolic process	IEP	HCCA
BP	GO:0032535	regulation of cellular component size	IEP	HCCA
MF	GO:0032934	sterol binding	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0042761	very long-chain fatty acid biosynthetic process	IEP	HCCA
BP	GO:0043473	pigmentation	IEP	HCCA
BP	GO:0043476	pigment accumulation	IEP	HCCA
BP	GO:0043478	pigment accumulation in response to UV light	IEP	HCCA
BP	GO:0043479	pigment accumulation in tissues in response to UV light	IEP	HCCA
BP	GO:0043480	pigment accumulation in tissues	IEP	HCCA
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	IEP	HCCA
BP	GO:0045927	positive regulation of growth	IEP	HCCA
BP	GO:0046620	regulation of organ growth	IEP	HCCA
BP	GO:0046622	positive regulation of organ growth	IEP	HCCA
MF	GO:0047807	cytokinin 7-beta-glucosyltransferase activity	IEP	HCCA
BP	GO:0048438	floral whorl development	IEP	HCCA
BP	GO:0048449	floral organ formation	IEP	HCCA
BP	GO:0048462	carpel formation	IEP	HCCA
BP	GO:0048467	gynoecium development	IEP	HCCA
BP	GO:0048639	positive regulation of developmental growth	IEP	HCCA
BP	GO:0048766	root hair initiation	IEP	HCCA
BP	GO:0048767	root hair elongation	IEP	HCCA
MF	GO:0050062	long-chain-fatty-acyl-CoA reductase activity	IEP	HCCA
MF	GO:0050307	sucrose-phosphate phosphatase activity	IEP	HCCA
MF	GO:0050308	sugar-phosphatase activity	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
MF	GO:0051723	protein methylesterase activity	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0060918	auxin transport	IEP	HCCA
BP	GO:0071214	cellular response to abiotic stimulus	IEP	HCCA
BP	GO:0071398	cellular response to fatty acid	IEP	HCCA
BP	GO:0071478	cellular response to radiation	IEP	HCCA
BP	GO:0071482	cellular response to light stimulus	IEP	HCCA
BP	GO:0071483	cellular response to blue light	IEP	HCCA
BP	GO:0071489	cellular response to red or far red light	IEP	HCCA
BP	GO:0071491	cellular response to red light	IEP	HCCA
BP	GO:0071731	response to nitric oxide	IEP	HCCA
BP	GO:0071732	cellular response to nitric oxide	IEP	HCCA
MF	GO:0080019	fatty-acyl-CoA reductase (alcohol-forming) activity	IEP	HCCA
MF	GO:0080062	cytokinin 9-beta-glucosyltransferase activity	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
BP	GO:0080126	ovary septum development	IEP	HCCA
MF	GO:0080161	auxin transmembrane transporter activity	IEP	HCCA
BP	GO:0080167	response to karrikin	IEP	HCCA
BP	GO:0090066	regulation of anatomical structure size	IEP	HCCA
BP	GO:0104004	cellular response to environmental stimulus	IEP	HCCA
BP	GO:1900140	regulation of seedling development	IEP	HCCA
BP	GO:1902446	regulation of shade avoidance	IEP	HCCA
BP	GO:1902448	positive regulation of shade avoidance	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:1905328	plant septum development	IEP	HCCA
BP	GO:1905392	plant organ morphogenesis	IEP	HCCA
BP	GO:2000030	regulation of response to red or far red light	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	182	229

External Links

PLAZA 3.0 Dicots	AT4G34530

AT4G34530

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation