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AT1G20230


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0017568 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G20230
Cluster HCCA: Cluster_232


Type GO Term Name Evidence Source
CC GO:0005575 cellular_component ND Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000959 mitochondrial RNA metabolic process IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006333 chromatin assembly or disassembly IEP HCCA
BP GO:0006730 one-carbon metabolic process IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0080156 mitochondrial mRNA modification IEP HCCA
BP GO:1900864 mitochondrial RNA modification IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 452 499
IPR002885 Pentatricopeptide_repeat 352 398
IPR002885 Pentatricopeptide_repeat 593 622
IPR002885 Pentatricopeptide_repeat 321 346
IPR002885 Pentatricopeptide_repeat 291 313
IPR002885 Pentatricopeptide_repeat 527 551
IPR002885 Pentatricopeptide_repeat 82 112
IPR032867 DYW_dom 626 750
IPR002885 Pentatricopeptide_repeat 181 227
PLAZA 3.0 Dicots AT1G20230