1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT4G35540

AT4G35540


Description : zinc ion binding;transcription regulators


Gene families : OG_01_0008755 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0008755_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G35540
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Pp3c3_11130V3.1 No alias zinc ion binding;transcription regulators 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0001093 TFIIB-class transcription factor binding IDA Interproscan
MF GO:0003690 double-stranded DNA binding IDA Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0009793 embryo development ending in seed dormancy IMP Interproscan
BP GO:0009846 pollen germination IMP Interproscan
BP GO:0010440 stomatal lineage progression RCA Interproscan
MF GO:0070063 RNA polymerase binding IDA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000412 histone peptidyl-prolyl isomerization IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005956 protein kinase CK2 complex IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006464 cellular protein modification process IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007031 peroxisome organization IEP HCCA
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP HCCA
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0009756 carbohydrate mediated signaling IEP HCCA
BP GO:0010182 sugar mediated signaling pathway IEP HCCA
BP GO:0010212 response to ionizing radiation IEP HCCA
BP GO:0010332 response to gamma radiation IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0016783 sulfurtransferase activity IEP HCCA
MF GO:0017110 nucleoside-diphosphatase activity IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
MF GO:0031071 cysteine desulfurase activity IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0042753 positive regulation of circadian rhythm IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044267 cellular protein metabolic process IEP HCCA
BP GO:0048825 cotyledon development IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0080188 gene silencing by RNA-directed DNA methylation IEP HCCA
BP GO:0140458 pre-transcriptional gene silencing by RNA IEP HCCA
InterPro domains Description Start Stop
IPR013137 Znf_TFIIB 1 35
PLAZA 3.0 Dicots AT4G35540