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AT4G36960


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0002625 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002625_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G36960
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Mp6g13280.1 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP HCCA
CC GO:0000793 condensed chromosome IEP HCCA
CC GO:0000794 condensed nuclear chromosome IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP HCCA
CC GO:0005795 Golgi stack IEP HCCA
CC GO:0005819 spindle IEP HCCA
CC GO:0005829 cytosol IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006617 SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009880 embryonic pattern specification IEP HCCA
BP GO:0010072 primary shoot apical meristem specification IEP HCCA
BP GO:0010265 SCF complex assembly IEP HCCA
BP GO:0010351 lithium ion transport IEP HCCA
BP GO:0010431 seed maturation IEP HCCA
MF GO:0015385 sodium:proton antiporter activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016208 AMP binding IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0033993 response to lipid IEP HCCA
BP GO:0034599 cellular response to oxidative stress IEP HCCA
BP GO:0034614 cellular response to reactive oxygen species IEP HCCA
BP GO:0035725 sodium ion transmembrane transport IEP HCCA
BP GO:0042752 regulation of circadian rhythm IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0045116 protein neddylation IEP HCCA
BP GO:0046685 response to arsenic-containing substance IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
MF GO:0051139 metal ion:proton antiporter activity IEP HCCA
MF GO:0052638 indole-3-butyrate beta-glucosyltransferase activity IEP HCCA
BP GO:0062197 cellular response to chemical stress IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0070301 cellular response to hydrogen peroxide IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071215 cellular response to abscisic acid stimulus IEP HCCA
BP GO:0071396 cellular response to lipid IEP HCCA
BP GO:0071470 cellular response to osmotic stress IEP HCCA
BP GO:0071472 cellular response to salt stress IEP HCCA
BP GO:0071474 cellular hyperosmotic response IEP HCCA
BP GO:0071475 cellular hyperosmotic salinity response IEP HCCA
BP GO:0080024 indolebutyric acid metabolic process IEP HCCA
BP GO:0097306 cellular response to alcohol IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 242 298
IPR000504 RRM_dom 5 66
IPR000504 RRM_dom 93 158
PLAZA 3.0 Dicots AT4G36960