1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT5G01110

AT5G01110


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000698 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000698_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G01110
Cluster HCCA: Cluster_226

Target Alias Description ECC score Gene Family Method Actions
AT1G05670 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G09680 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G06400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G59900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000959 mitochondrial RNA metabolic process IEP HCCA
MF GO:0004619 phosphoglycerate mutase activity IEP HCCA
CC GO:0005677 chromatin silencing complex IEP HCCA
BP GO:0008285 negative regulation of cell population proliferation IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0010101 post-embryonic root morphogenesis IEP HCCA
BP GO:0010102 lateral root morphogenesis IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016604 nuclear body IEP HCCA
CC GO:0016607 nuclear speck IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP HCCA
BP GO:0031056 regulation of histone modification IEP HCCA
BP GO:0031058 positive regulation of histone modification IEP HCCA
BP GO:0031060 regulation of histone methylation IEP HCCA
BP GO:0031062 positive regulation of histone methylation IEP HCCA
BP GO:0031401 positive regulation of protein modification process IEP HCCA
BP GO:0032270 positive regulation of cellular protein metabolic process IEP HCCA
BP GO:0048572 short-day photoperiodism IEP HCCA
BP GO:0048575 short-day photoperiodism, flowering IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
BP GO:0051569 regulation of histone H3-K4 methylation IEP HCCA
BP GO:0051571 positive regulation of histone H3-K4 methylation IEP HCCA
BP GO:0061085 regulation of histone H3-K27 methylation IEP HCCA
BP GO:0061087 positive regulation of histone H3-K27 methylation IEP HCCA
BP GO:0080156 mitochondrial mRNA modification IEP HCCA
BP GO:0090698 post-embryonic plant morphogenesis IEP HCCA
BP GO:1900864 mitochondrial RNA modification IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 444 492
IPR002885 Pentatricopeptide_repeat 202 247
IPR002885 Pentatricopeptide_repeat 268 317
IPR002885 Pentatricopeptide_repeat 655 703
IPR002885 Pentatricopeptide_repeat 514 562
IPR002885 Pentatricopeptide_repeat 583 627
IPR002885 Pentatricopeptide_repeat 168 196
IPR002885 Pentatricopeptide_repeat 116 142
IPR002885 Pentatricopeptide_repeat 335 367
IPR002885 Pentatricopeptide_repeat 405 436
PLAZA 3.0 Dicots AT5G01110