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  5. AT5G03340

AT5G03340


Description : ATPase, AAA-type, CDC48 protein


Gene families : OG_01_0000336 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000336_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G03340
Cluster HCCA: Cluster_260

Target Alias Description ECC score Gene Family Method Actions
Pp3c3_6980V3.1 No alias ATPase, AAA-type, CDC48 protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005618 cell wall IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005794 Golgi apparatus IDA Interproscan
CC GO:0005829 cytosol IDA Interproscan
MF GO:0016887 ATP hydrolysis activity ISS Interproscan
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
BP GO:0000302 response to reactive oxygen species IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP HCCA
MF GO:0004448 isocitrate dehydrogenase activity IEP HCCA
MF GO:0004450 isocitrate dehydrogenase (NADP+) activity IEP HCCA
MF GO:0004619 phosphoglycerate mutase activity IEP HCCA
CC GO:0005963 magnesium-dependent protein serine/threonine phosphatase complex IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006446 regulation of translational initiation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009408 response to heat IEP HCCA
BP GO:0009642 response to light intensity IEP HCCA
BP GO:0009644 response to high light intensity IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0034605 cellular response to heat IEP HCCA
BP GO:0042542 response to hydrogen peroxide IEP HCCA
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP HCCA
BP GO:0045893 positive regulation of transcription, DNA-templated IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
MF GO:0046537 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
MF GO:0070300 phosphatidic acid binding IEP HCCA
BP GO:0080148 negative regulation of response to water deprivation IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2000070 regulation of response to water deprivation IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 244 373
IPR003959 ATPase_AAA_core 517 650
IPR003338 CDC4_N-term_subdom 29 110
IPR004201 Cdc48_dom2 131 194
PLAZA 3.0 Dicots AT5G03340