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  5. AT5G04050

AT5G04050


Description : RNA-directed DNA polymerase (reverse transcriptase)


Gene families : OG_01_0000770 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000770_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G04050
Cluster HCCA: Cluster_38


Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
BP GO:0000280 nuclear division IEP HCCA
CC GO:0000930 gamma-tubulin complex IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
BP GO:0000959 mitochondrial RNA metabolic process IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004843 thiol-dependent deubiquitinase IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005635 nuclear envelope IEP HCCA
CC GO:0005797 Golgi medial cisterna IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006312 mitotic recombination IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006513 protein monoubiquitination IEP HCCA
BP GO:0006714 sesquiterpenoid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007020 microtubule nucleation IEP HCCA
BP GO:0007346 regulation of mitotic cell cycle IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008242 omega peptidase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009687 abscisic acid metabolic process IEP HCCA
BP GO:0009688 abscisic acid biosynthetic process IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0009880 embryonic pattern specification IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
CC GO:0009898 cytoplasmic side of plasma membrane IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010072 primary shoot apical meristem specification IEP HCCA
BP GO:0010074 maintenance of meristem identity IEP HCCA
BP GO:0010154 fruit development IEP HCCA
BP GO:0010267 production of ta-siRNAs involved in RNA interference IEP HCCA
BP GO:0010383 cell wall polysaccharide metabolic process IEP HCCA
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle IEP HCCA
BP GO:0010390 histone monoubiquitination IEP HCCA
BP GO:0010410 hemicellulose metabolic process IEP HCCA
BP GO:0010413 glucuronoxylan metabolic process IEP HCCA
BP GO:0010431 seed maturation IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 posttranscriptional regulation of gene expression IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016106 sesquiterpenoid biosynthetic process IEP HCCA
BP GO:0016246 RNA interference IEP HCCA
BP GO:0016441 posttranscriptional gene silencing IEP HCCA
BP GO:0016574 histone ubiquitination IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP HCCA
BP GO:0019827 stem cell population maintenance IEP HCCA
BP GO:0030422 production of siRNA involved in RNA interference IEP HCCA
BP GO:0031047 gene silencing by RNA IEP HCCA
BP GO:0031050 dsRNA processing IEP HCCA
BP GO:0031204 posttranslational protein targeting to membrane, translocation IEP HCCA
CC GO:0031985 Golgi cisterna IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0033523 histone H2B ubiquitination IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0035194 post-transcriptional gene silencing by RNA IEP HCCA
MF GO:0035252 UDP-xylosyltransferase activity IEP HCCA
MF GO:0042285 xylosyltransferase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043288 apocarotenoid metabolic process IEP HCCA
BP GO:0043289 apocarotenoid biosynthetic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044038 cell wall macromolecule biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0045491 xylan metabolic process IEP HCCA
BP GO:0045492 xylan biosynthetic process IEP HCCA
BP GO:0045595 regulation of cell differentiation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048366 leaf development IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048825 cotyledon development IEP HCCA
BP GO:0048827 phyllome development IEP HCCA
MF GO:0050513 glycoprotein 2-beta-D-xylosyltransferase activity IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0050665 hydrogen peroxide biosynthetic process IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0070589 cellular component macromolecule biosynthetic process IEP HCCA
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0080156 mitochondrial mRNA modification IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090421 embryonic meristem initiation IEP HCCA
CC GO:0098552 side of membrane IEP HCCA
CC GO:0098562 cytoplasmic side of membrane IEP HCCA
BP GO:0098727 maintenance of cell number IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
BP GO:1900864 mitochondrial RNA modification IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1902644 tertiary alcohol metabolic process IEP HCCA
BP GO:1902645 tertiary alcohol biosynthetic process IEP HCCA
BP GO:1902749 regulation of cell cycle G2/M phase transition IEP HCCA
BP GO:1903409 reactive oxygen species biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR024937 Domain_X 544 598
PLAZA 3.0 Dicots AT5G04050