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  5. AT5G04340

AT5G04340


Description : zinc finger of Arabidopsis thaliana 6


Gene families : OG_01_0000119 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000119_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G04340
Cluster HCCA: Cluster_215

Target Alias Description ECC score Gene Family Method Actions
AT2G28710 No alias C2H2-type zinc finger family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G37430 No alias C2H2 and C2HC zinc fingers superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G46090 No alias C2H2 and C2HC zinc fingers superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c18_22010V3.1 No alias C2H2-like zinc finger protein 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_04998.1 No alias C2H2 zinc finger transcription factor 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISS Interproscan
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
BP GO:0010200 response to chitin RCA Interproscan
BP GO:0055062 phosphate ion homeostasis IGI Interproscan
BP GO:2000280 regulation of root development IGI Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
CC GO:0000322 storage vacuole IEP HCCA
CC GO:0000326 protein storage vacuole IEP HCCA
BP GO:0001101 response to acid chemical IEP HCCA
BP GO:0002218 activation of innate immune response IEP HCCA
BP GO:0002252 immune effector process IEP HCCA
BP GO:0002253 activation of immune response IEP HCCA
BP GO:0002376 immune system process IEP HCCA
BP GO:0002679 respiratory burst involved in defense response IEP HCCA
BP GO:0002682 regulation of immune system process IEP HCCA
BP GO:0002684 positive regulation of immune system process IEP HCCA
BP GO:0002831 regulation of response to biotic stimulus IEP HCCA
BP GO:0002833 positive regulation of response to biotic stimulus IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006355 regulation of transcription, DNA-templated IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006914 autophagy IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006970 response to osmotic stress IEP HCCA
BP GO:0006972 hyperosmotic response IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008061 chitin binding IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008300 isoprenoid catabolic process IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009414 response to water deprivation IEP HCCA
BP GO:0009415 response to water IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009611 response to wounding IEP HCCA
BP GO:0009612 response to mechanical stimulus IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009642 response to light intensity IEP HCCA
BP GO:0009646 response to absence of light IEP HCCA
BP GO:0009651 response to salt stress IEP HCCA
BP GO:0009685 gibberellin metabolic process IEP HCCA
BP GO:0009692 ethylene metabolic process IEP HCCA
BP GO:0009693 ethylene biosynthetic process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009723 response to ethylene IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0009737 response to abscisic acid IEP HCCA
BP GO:0009738 abscisic acid-activated signaling pathway IEP HCCA
BP GO:0009755 hormone-mediated signaling pathway IEP HCCA
BP GO:0009863 salicylic acid mediated signaling pathway IEP HCCA
BP GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway IEP HCCA
BP GO:0009867 jasmonic acid mediated signaling pathway IEP HCCA
BP GO:0009873 ethylene-activated signaling pathway IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009890 negative regulation of biosynthetic process IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0009968 negative regulation of signal transduction IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010035 response to inorganic substance IEP HCCA
BP GO:0010104 regulation of ethylene-activated signaling pathway IEP HCCA
BP GO:0010105 negative regulation of ethylene-activated signaling pathway IEP HCCA
BP GO:0010117 photoprotection IEP HCCA
BP GO:0010286 heat acclimation IEP HCCA
BP GO:0010363 regulation of plant-type hypersensitive response IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0010648 negative regulation of cell communication IEP HCCA
BP GO:0010941 regulation of cell death IEP HCCA
BP GO:0010942 positive regulation of cell death IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0015802 basic amino acid transport IEP HCCA
BP GO:0016042 lipid catabolic process IEP HCCA
BP GO:0016054 organic acid catabolic process IEP HCCA
BP GO:0016101 diterpenoid metabolic process IEP HCCA
BP GO:0016103 diterpenoid catabolic process IEP HCCA
BP GO:0016115 terpenoid catabolic process IEP HCCA
MF GO:0016289 CoA hydrolase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019374 galactolipid metabolic process IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
BP GO:0023057 negative regulation of signaling IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0031327 negative regulation of cellular biosynthetic process IEP HCCA
BP GO:0031341 regulation of cell killing IEP HCCA
BP GO:0031343 positive regulation of cell killing IEP HCCA
BP GO:0031347 regulation of defense response IEP HCCA
BP GO:0031349 positive regulation of defense response IEP HCCA
MF GO:0031406 carboxylic acid binding IEP HCCA
BP GO:0032101 regulation of response to external stimulus IEP HCCA
BP GO:0032103 positive regulation of response to external stimulus IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033037 polysaccharide localization IEP HCCA
MF GO:0033293 monocarboxylic acid binding IEP HCCA
BP GO:0033993 response to lipid IEP HCCA
BP GO:0034053 modulation by symbiont of host defense-related programmed cell death IEP HCCA
BP GO:0034613 cellular protein localization IEP HCCA
BP GO:0035264 multicellular organism growth IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0035821 modulation of process of other organism IEP HCCA
BP GO:0042538 hyperosmotic salinity response IEP HCCA
BP GO:0043067 regulation of programmed cell death IEP HCCA
BP GO:0043068 positive regulation of programmed cell death IEP HCCA
BP GO:0043069 negative regulation of programmed cell death IEP HCCA
MF GO:0043177 organic acid binding IEP HCCA
BP GO:0043269 regulation of ion transport IEP HCCA
BP GO:0043449 cellular alkene metabolic process IEP HCCA
BP GO:0043450 alkene biosynthetic process IEP HCCA
BP GO:0043455 regulation of secondary metabolic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0043903 regulation of biological process involved in symbiotic interaction IEP HCCA
BP GO:0044003 modulation by symbiont of host process IEP HCCA
BP GO:0044068 modulation by symbiont of host cellular process IEP HCCA
BP GO:0044242 cellular lipid catabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0045088 regulation of innate immune response IEP HCCA
BP GO:0045089 positive regulation of innate immune response IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0045487 gibberellin catabolic process IEP HCCA
MF GO:0045543 gibberellin 2-beta-dioxygenase activity IEP HCCA
BP GO:0045730 respiratory burst IEP HCCA
BP GO:0045892 negative regulation of transcription, DNA-templated IEP HCCA
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0047617 acyl-CoA hydrolase activity IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0048585 negative regulation of response to stimulus IEP HCCA
BP GO:0050776 regulation of immune response IEP HCCA
BP GO:0050778 positive regulation of immune response IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051049 regulation of transport IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051253 negative regulation of RNA metabolic process IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0051701 biological process involved in interaction with host IEP HCCA
BP GO:0051709 regulation of killing of cells of other organism IEP HCCA
BP GO:0051712 positive regulation of killing of cells of other organism IEP HCCA
BP GO:0051817 modulation of process of other organism involved in symbiotic interaction IEP HCCA
BP GO:0052031 modulation by symbiont of host defense response IEP HCCA
BP GO:0052040 modulation by symbiont of host programmed cell death IEP HCCA
BP GO:0052042 positive regulation by symbiont of host programmed cell death IEP HCCA
BP GO:0052158 modulation by symbiont of host resistance gene-dependent defense response IEP HCCA
BP GO:0052167 modulation by symbiont of host innate immune response IEP HCCA
BP GO:0052173 response to defenses of other organism IEP HCCA
BP GO:0052200 response to host defenses IEP HCCA
BP GO:0052390 induction by symbiont of host innate immune response IEP HCCA
BP GO:0052542 defense response by callose deposition IEP HCCA
BP GO:0052545 callose localization IEP HCCA
BP GO:0052553 modulation by symbiont of host immune response IEP HCCA
BP GO:0052559 induction by symbiont of host immune response IEP HCCA
BP GO:0052572 response to host immune response IEP HCCA
MF GO:0052634 C-19 gibberellin 2-beta-dioxygenase activity IEP HCCA
MF GO:0052635 C-20 gibberellin 2-beta-dioxygenase activity IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0060548 negative regulation of cell death IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
BP GO:0070297 regulation of phosphorelay signal transduction system IEP HCCA
BP GO:0070298 negative regulation of phosphorelay signal transduction system IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0070887 cellular response to chemical stimulus IEP HCCA
BP GO:0071214 cellular response to abiotic stimulus IEP HCCA
BP GO:0071323 cellular response to chitin IEP HCCA
BP GO:0071417 cellular response to organonitrogen compound IEP HCCA
BP GO:0071470 cellular response to osmotic stress IEP HCCA
BP GO:0071472 cellular response to salt stress IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0075136 response to host IEP HCCA
BP GO:0080036 regulation of cytokinin-activated signaling pathway IEP HCCA
BP GO:0080037 negative regulation of cytokinin-activated signaling pathway IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0080134 regulation of response to stress IEP HCCA
BP GO:0080135 regulation of cellular response to stress IEP HCCA
BP GO:0080185 effector-mediated induction of plant hypersensitive response by symbiont IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
BP GO:0097305 response to alcohol IEP HCCA
BP GO:0104004 cellular response to environmental stimulus IEP HCCA
BP GO:0120251 hydrocarbon biosynthetic process IEP HCCA
BP GO:0120252 hydrocarbon metabolic process IEP HCCA
BP GO:0120254 olefinic compound metabolic process IEP HCCA
BP GO:0120255 olefinic compound biosynthetic process IEP HCCA
BP GO:0140404 effector-mediated modulation of host innate immune response by symbiont IEP HCCA
BP GO:0140415 effector-mediated modulation of host defenses by symbiont IEP HCCA
BP GO:0140418 effector-mediated modulation of host process by symbiont IEP HCCA
BP GO:1900673 olefin metabolic process IEP HCCA
BP GO:1900674 olefin biosynthetic process IEP HCCA
MF GO:1901149 salicylic acid binding IEP HCCA
BP GO:1901701 cellular response to oxygen-containing compound IEP HCCA
BP GO:1902532 negative regulation of intracellular signal transduction IEP HCCA
BP GO:1902679 negative regulation of RNA biosynthetic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP HCCA
BP GO:2000762 regulation of phenylpropanoid metabolic process IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

PLAZA 3.0 Dicots AT5G04340