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  5. AT5G04780

AT5G04780


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0017165 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G04780
Cluster HCCA: Cluster_38


Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
CC GO:0009507 chloroplast IDA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000811 GINS complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004396 hexokinase activity IEP HCCA
MF GO:0004629 phospholipase C activity IEP HCCA
MF GO:0005092 GDP-dissociation inhibitor activity IEP HCCA
MF GO:0005093 Rab GDP-dissociation inhibitor activity IEP HCCA
MF GO:0005337 nucleoside transmembrane transporter activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006808 regulation of nitrogen utilization IEP HCCA
BP GO:0008156 negative regulation of DNA replication IEP HCCA
MF GO:0008901 ferredoxin hydrogenase activity IEP HCCA
BP GO:0009404 toxin metabolic process IEP HCCA
BP GO:0009407 toxin catabolic process IEP HCCA
BP GO:0009432 SOS response IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009612 response to mechanical stimulus IEP HCCA
MF GO:0009672 auxin:proton symporter activity IEP HCCA
BP GO:0009751 response to salicylic acid IEP HCCA
BP GO:0009914 hormone transport IEP HCCA
BP GO:0009926 auxin polar transport IEP HCCA
BP GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid IEP HCCA
BP GO:0009967 positive regulation of signal transduction IEP HCCA
BP GO:0009969 xyloglucan biosynthetic process IEP HCCA
BP GO:0010225 response to UV-C IEP HCCA
BP GO:0010583 response to cyclopentenone IEP HCCA
BP GO:0010647 positive regulation of cell communication IEP HCCA
BP GO:0014070 response to organic cyclic compound IEP HCCA
BP GO:0015858 nucleoside transport IEP HCCA
BP GO:0015864 pyrimidine nucleoside transport IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
MF GO:0016629 12-oxophytodienoate reductase activity IEP HCCA
MF GO:0016695 oxidoreductase activity, acting on hydrogen as donor IEP HCCA
MF GO:0016699 oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
MF GO:0019789 SUMO transferase activity IEP HCCA
MF GO:0022821 potassium ion antiporter activity IEP HCCA
BP GO:0023056 positive regulation of signaling IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
CC GO:0031261 DNA replication preinitiation complex IEP HCCA
CC GO:0031306 intrinsic component of mitochondrial outer membrane IEP HCCA
CC GO:0031307 integral component of mitochondrial outer membrane IEP HCCA
BP GO:0031401 positive regulation of protein modification process IEP HCCA
BP GO:0031647 regulation of protein stability IEP HCCA
CC GO:0032592 integral component of mitochondrial membrane IEP HCCA
BP GO:0032876 negative regulation of DNA endoreduplication IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
MF GO:0033843 xyloglucan 6-xylosyltransferase activity IEP HCCA
MF GO:0035252 UDP-xylosyltransferase activity IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
MF GO:0042285 xylosyltransferase activity IEP HCCA
BP GO:0043200 response to amino acid IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0045931 positive regulation of mitotic cell cycle IEP HCCA
BP GO:0048584 positive regulation of response to stimulus IEP HCCA
MF GO:0050566 asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity IEP HCCA
BP GO:0050821 protein stabilization IEP HCCA
MF GO:0051879 Hsp90 protein binding IEP HCCA
BP GO:0060249 anatomical structure homeostasis IEP HCCA
BP GO:0060250 germ-line stem-cell niche homeostasis IEP HCCA
BP GO:0060918 auxin transport IEP HCCA
BP GO:0070919 production of siRNA involved in gene silencing by small RNA IEP HCCA
BP GO:0080036 regulation of cytokinin-activated signaling pathway IEP HCCA
BP GO:0080038 positive regulation of cytokinin-activated signaling pathway IEP HCCA
BP GO:0080050 regulation of seed development IEP HCCA
BP GO:0090333 regulation of stomatal closure IEP HCCA
CC GO:0098573 intrinsic component of mitochondrial membrane IEP HCCA
BP GO:0098754 detoxification IEP HCCA
BP GO:2000034 regulation of seed maturation IEP HCCA
BP GO:2000104 negative regulation of DNA-dependent DNA replication IEP HCCA
BP GO:2000539 regulation of protein geranylgeranylation IEP HCCA
BP GO:2000541 positive regulation of protein geranylgeranylation IEP HCCA
BP GO:2000693 positive regulation of seed maturation IEP HCCA
BP GO:2001020 regulation of response to DNA damage stimulus IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 201 226
IPR002885 Pentatricopeptide_repeat 229 256
IPR002885 Pentatricopeptide_repeat 100 126
IPR002885 Pentatricopeptide_repeat 330 374
IPR002885 Pentatricopeptide_repeat 127 172
IPR002885 Pentatricopeptide_repeat 395 423
IPR032867 DYW_dom 502 624
PLAZA 3.0 Dicots AT5G04780