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  5. AT5G06490

AT5G06490


Description : RING/U-box superfamily protein


Gene families : OG_01_0000140 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000140_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G06490
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
Mp1g27170.1 No alias RING-H2-class E3 ligase 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06030.1 No alias RING-H2-class E3 ligase 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp8g15250.1 No alias RING-H2-class E3 ligase 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0000064 L-ornithine transmembrane transporter activity IEP HCCA
CC GO:0000323 lytic vacuole IEP HCCA
BP GO:0000738 DNA catabolic process, exonucleolytic IEP HCCA
MF GO:0000976 transcription cis-regulatory region binding IEP HCCA
MF GO:0001046 core promoter sequence-specific DNA binding IEP HCCA
MF GO:0001067 transcription regulatory region nucleic acid binding IEP HCCA
BP GO:0002215 defense response to nematode IEP HCCA
BP GO:0002218 activation of innate immune response IEP HCCA
BP GO:0002253 activation of immune response IEP HCCA
BP GO:0002684 positive regulation of immune system process IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0004675 transmembrane receptor protein serine/threonine kinase activity IEP HCCA
MF GO:0004805 trehalose-phosphatase activity IEP HCCA
MF GO:0005290 L-histidine transmembrane transporter activity IEP HCCA
MF GO:0005337 nucleoside transmembrane transporter activity IEP HCCA
MF GO:0005476 carnitine:acyl carnitine antiporter activity IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005615 extracellular space IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0006308 DNA catabolic process IEP HCCA
BP GO:0006355 regulation of transcription, DNA-templated IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006560 proline metabolic process IEP HCCA
BP GO:0006561 proline biosynthetic process IEP HCCA
BP GO:0006878 cellular copper ion homeostasis IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0007166 cell surface receptor signaling pathway IEP HCCA
BP GO:0007167 enzyme linked receptor protein signaling pathway IEP HCCA
BP GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway IEP HCCA
BP GO:0007389 pattern specification process IEP HCCA
BP GO:0007568 aging IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0008300 isoprenoid catabolic process IEP HCCA
MF GO:0008429 phosphatidylethanolamine binding IEP HCCA
MF GO:0008506 sucrose:proton symporter activity IEP HCCA
MF GO:0008970 phospholipase A1 activity IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0009556 microsporogenesis IEP HCCA
BP GO:0009611 response to wounding IEP HCCA
MF GO:0009669 sucrose:cation symporter activity IEP HCCA
BP GO:0009685 gibberellin metabolic process IEP HCCA
BP GO:0009698 phenylpropanoid metabolic process IEP HCCA
BP GO:0009699 phenylpropanoid biosynthetic process IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0009742 brassinosteroid mediated signaling pathway IEP HCCA
BP GO:0009751 response to salicylic acid IEP HCCA
BP GO:0009838 abscission IEP HCCA
BP GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009944 polarity specification of adaxial/abaxial axis IEP HCCA
BP GO:0010014 meristem initiation IEP HCCA
BP GO:0010076 maintenance of floral meristem identity IEP HCCA
BP GO:0010077 maintenance of inflorescence meristem identity IEP HCCA
BP GO:0010152 pollen maturation IEP HCCA
BP GO:0010223 secondary shoot formation IEP HCCA
BP GO:0010227 floral organ abscission IEP HCCA
BP GO:0010252 auxin homeostasis IEP HCCA
BP GO:0010254 nectary development IEP HCCA
MF GO:0010279 indole-3-acetic acid amido synthetase activity IEP HCCA
CC GO:0010282 senescence-associated vacuole IEP HCCA
BP GO:0010345 suberin biosynthetic process IEP HCCA
BP GO:0010346 shoot axis formation IEP HCCA
BP GO:0010434 bract formation IEP HCCA
MF GO:0010436 carotenoid dioxygenase activity IEP HCCA
BP GO:0010582 floral meristem determinacy IEP HCCA
BP GO:0014070 response to organic cyclic compound IEP HCCA
MF GO:0015101 organic cation transmembrane transporter activity IEP HCCA
MF GO:0015173 aromatic amino acid transmembrane transporter activity IEP HCCA
MF GO:0015174 basic amino acid transmembrane transporter activity IEP HCCA
MF GO:0015179 L-amino acid transmembrane transporter activity IEP HCCA
MF GO:0015189 L-lysine transmembrane transporter activity IEP HCCA
MF GO:0015226 carnitine transmembrane transporter activity IEP HCCA
MF GO:0015227 acyl carnitine transmembrane transporter activity IEP HCCA
MF GO:0015651 quaternary ammonium group transmembrane transporter activity IEP HCCA
BP GO:0016101 diterpenoid metabolic process IEP HCCA
BP GO:0016103 diterpenoid catabolic process IEP HCCA
BP GO:0016115 terpenoid catabolic process IEP HCCA
MF GO:0016530 metallochaperone activity IEP HCCA
MF GO:0016531 copper chaperone activity IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
MF GO:0019203 carbohydrate phosphatase activity IEP HCCA
BP GO:0019217 regulation of fatty acid metabolic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0034293 sexual sporulation IEP HCCA
BP GO:0042304 regulation of fatty acid biosynthetic process IEP HCCA
BP GO:0043401 steroid hormone mediated signaling pathway IEP HCCA
BP GO:0043934 sporulation IEP HCCA
BP GO:0044550 secondary metabolite biosynthetic process IEP HCCA
BP GO:0045089 positive regulation of innate immune response IEP HCCA
BP GO:0045487 gibberellin catabolic process IEP HCCA
BP GO:0045490 pectin catabolic process IEP HCCA
MF GO:0045543 gibberellin 2-beta-dioxygenase activity IEP HCCA
MF GO:0045549 9-cis-epoxycarotenoid dioxygenase activity IEP HCCA
BP GO:0046339 diacylglycerol metabolic process IEP HCCA
BP GO:0046340 diacylglycerol catabolic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
BP GO:0046461 neutral lipid catabolic process IEP HCCA
BP GO:0046462 monoacylglycerol metabolic process IEP HCCA
BP GO:0046464 acylglycerol catabolic process IEP HCCA
BP GO:0046503 glycerolipid catabolic process IEP HCCA
MF GO:0047372 acylglycerol lipase activity IEP HCCA
BP GO:0048236 plant-type sporogenesis IEP HCCA
BP GO:0048367 shoot system development IEP HCCA
BP GO:0048443 stamen development IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048645 animal organ formation IEP HCCA
BP GO:0048731 system development IEP HCCA
MF GO:0050062 long-chain-fatty-acyl-CoA reductase activity IEP HCCA
BP GO:0050778 positive regulation of immune response IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0050829 defense response to Gram-negative bacterium IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051321 meiotic cell cycle IEP HCCA
MF GO:0052634 C-19 gibberellin 2-beta-dioxygenase activity IEP HCCA
BP GO:0052651 monoacylglycerol catabolic process IEP HCCA
BP GO:0055070 copper ion homeostasis IEP HCCA
BP GO:0065001 specification of axis polarity IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
MF GO:0072349 modified amino acid transmembrane transporter activity IEP HCCA
BP GO:0080006 internode patterning IEP HCCA
MF GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0080140 regulation of jasmonic acid metabolic process IEP HCCA
BP GO:0080141 regulation of jasmonic acid biosynthetic process IEP HCCA
BP GO:0090567 reproductive shoot system development IEP HCCA
BP GO:0090697 post-embryonic plant organ morphogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
MF GO:1901474 azole transmembrane transporter activity IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
MF GO:1990837 sequence-specific double-stranded DNA binding IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 128 171
PLAZA 3.0 Dicots AT5G06490