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  5. AT5G07640

AT5G07640


Description : RING/U-box superfamily protein


Gene families : OG_01_0000252 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G07640
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AT2G16520 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G43180 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45460 No alias IBR domain containing protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45470 No alias IBR domain containing protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45480 No alias RING/U-box protein with C6HC-type zinc finger 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45560 No alias zinc finger (C3HC4-type RING finger) family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45570 No alias RING/U-box protein with C6HC-type zinc finger domain 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000374 Group III intron splicing IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0003964 RNA-directed DNA polymerase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
BP GO:0006278 RNA-dependent DNA biosynthetic process IEP HCCA
BP GO:0009956 radial pattern formation IEP HCCA
BP GO:0010496 intercellular transport IEP HCCA
BP GO:0030198 extracellular matrix organization IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0043062 extracellular structure organization IEP HCCA
BP GO:0051026 chiasma assembly IEP HCCA
BP GO:0071897 DNA biosynthetic process IEP HCCA
BP GO:0090057 root radial pattern formation IEP HCCA
BP GO:0090351 seedling development IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR002867 IBR_dom 230 298
IPR002156 RNaseH_domain 23 122
PLAZA 3.0 Dicots AT5G07640