1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT5G08750

AT5G08750


Description : RING/FYVE/PHD zinc finger superfamily protein


Gene families : OG_01_0007811 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0007811_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G08750
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Zci_14110.1 No alias no hits & (original description: none) 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0004683 calmodulin-dependent protein kinase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005673 transcription factor TFIIE complex IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006857 oligopeptide transport IEP HCCA
BP GO:0007346 regulation of mitotic cell cycle IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009830 cell wall modification involved in abscission IEP HCCA
BP GO:0009900 dehiscence IEP HCCA
BP GO:0009901 anther dehiscence IEP HCCA
BP GO:0010047 fruit dehiscence IEP HCCA
BP GO:0010048 vernalization response IEP HCCA
BP GO:0010393 galacturonan metabolic process IEP HCCA
BP GO:0015833 peptide transport IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0044277 cell wall disassembly IEP HCCA
BP GO:0045488 pectin metabolic process IEP HCCA
BP GO:0045490 pectin catabolic process IEP HCCA
BP GO:0048235 pollen sperm cell differentiation IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 120 156
PLAZA 3.0 Dicots AT5G08750