AT5G12310


Description : RING/U-box superfamily protein


Gene families : OG_01_0005301 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0005301_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G12310
Cluster HCCA: Cluster_217


Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0007062 sister chromatid cohesion RCA Interproscan
BP GO:0007131 reciprocal meiotic recombination RCA Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
BP GO:0033044 regulation of chromosome organization RCA Interproscan
BP GO:0042138 meiotic DNA double-strand break formation RCA Interproscan
BP GO:0045132 meiotic chromosome segregation RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000578 embryonic axis specification IEP HCCA
BP GO:0002229 defense response to oomycetes IEP HCCA
BP GO:0002239 response to oomycetes IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003713 transcription coactivator activity IEP HCCA
MF GO:0004743 pyruvate kinase activity IEP HCCA
MF GO:0004930 G protein-coupled receptor activity IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006355 regulation of transcription, DNA-templated IEP HCCA
MF GO:0008020 G protein-coupled photoreceptor activity IEP HCCA
MF GO:0008418 protein-N-terminal asparagine amidohydrolase activity IEP HCCA
BP GO:0009739 response to gibberellin IEP HCCA
BP GO:0009798 axis specification IEP HCCA
MF GO:0009881 photoreceptor activity IEP HCCA
MF GO:0009883 red or far-red light photoreceptor activity IEP HCCA
BP GO:0009895 negative regulation of catabolic process IEP HCCA
BP GO:0010506 regulation of autophagy IEP HCCA
BP GO:0010507 negative regulation of autophagy IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0018126 protein hydroxylation IEP HCCA
BP GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019511 peptidyl-proline hydroxylation IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0031329 regulation of cellular catabolic process IEP HCCA
BP GO:0031330 negative regulation of cellular catabolic process IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP HCCA
BP GO:0034635 glutathione transport IEP HCCA
BP GO:0042939 tripeptide transport IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
BP GO:0045003 double-strand break repair via synthesis-dependent strand annealing IEP HCCA
BP GO:0048366 leaf development IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
MF GO:0070628 proteasome binding IEP HCCA
BP GO:0071985 multivesicular body sorting pathway IEP HCCA
BP GO:0072337 modified amino acid transport IEP HCCA
BP GO:0072348 sulfur compound transport IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR018957 Znf_C3HC4_RING-type 43 85
PLAZA 3.0 Dicots AT5G12310