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  5. AT5G16640

AT5G16640


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0000231 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000231_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G16640
Cluster HCCA: Cluster_221

Target Alias Description ECC score Gene Family Method Actions
AT1G12300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G62670 No alias rna processing factor 2 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G62910 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G63130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G63150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP HCCA
BP GO:0000731 DNA synthesis involved in DNA repair IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006261 DNA-dependent DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006346 DNA methylation-dependent heterochromatin assembly IEP HCCA
BP GO:0006464 cellular protein modification process IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006955 immune response IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010165 response to X-ray IEP HCCA
BP GO:0010212 response to ionizing radiation IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 posttranscriptional regulation of gene expression IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0015074 DNA integration IEP HCCA
BP GO:0016441 posttranscriptional gene silencing IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019985 translesion synthesis IEP HCCA
BP GO:0031047 gene silencing by RNA IEP HCCA
BP GO:0031056 regulation of histone modification IEP HCCA
BP GO:0031060 regulation of histone methylation IEP HCCA
BP GO:0031507 heterochromatin assembly IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0040029 regulation of gene expression, epigenetic IEP HCCA
BP GO:0042276 error-prone translesion synthesis IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0045087 innate immune response IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051567 histone H3-K9 methylation IEP HCCA
BP GO:0051570 regulation of histone H3-K9 methylation IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0061647 histone H3-K9 modification IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0071897 DNA biosynthetic process IEP HCCA
BP GO:0080188 gene silencing by RNA-directed DNA methylation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0140458 pre-transcriptional gene silencing by RNA IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
BP GO:1900109 regulation of histone H3-K9 dimethylation IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 464 501
IPR002885 Pentatricopeptide_repeat 115 163
IPR002885 Pentatricopeptide_repeat 184 233
IPR002885 Pentatricopeptide_repeat 394 443
IPR002885 Pentatricopeptide_repeat 254 302
IPR002885 Pentatricopeptide_repeat 324 373
PLAZA 3.0 Dicots AT5G16640