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  5. AT5G16840

AT5G16840


Description : binding partner of acd11 1


Gene families : OG_01_0001940 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001940_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G16840
Cluster HCCA: Cluster_213

Target Alias Description ECC score Gene Family Method Actions
Zci_13254.2 No alias no annotation 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0009735 response to cytokinin IDA Interproscan
BP GO:0016192 vesicle-mediated transport RCA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003727 single-stranded RNA binding IEP HCCA
MF GO:0003881 CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity IEP HCCA
MF GO:0005483 soluble NSF attachment protein activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005635 nuclear envelope IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005773 vacuole IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
CC GO:0005829 cytosol IEP HCCA
BP GO:0006862 nucleotide transport IEP HCCA
BP GO:0006900 vesicle budding from membrane IEP HCCA
BP GO:0007029 endoplasmic reticulum organization IEP HCCA
MF GO:0008143 poly(A) binding IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009648 photoperiodism IEP HCCA
BP GO:0015802 basic amino acid transport IEP HCCA
CC GO:0016021 integral component of membrane IEP HCCA
BP GO:0016050 vesicle organization IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016621 cinnamoyl-CoA reductase activity IEP HCCA
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017169 CDP-alcohol phosphatidyltransferase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP HCCA
MF GO:0030371 translation repressor activity IEP HCCA
MF GO:0030674 protein-macromolecule adaptor activity IEP HCCA
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP HCCA
CC GO:0031300 intrinsic component of organelle membrane IEP HCCA
CC GO:0031301 integral component of organelle membrane IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042991 obsolete transcription factor import into nucleus IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0048573 photoperiodism, flowering IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
MF GO:0070717 poly-purine tract binding IEP HCCA
CC GO:0071458 integral component of cytoplasmic side of endoplasmic reticulum membrane IEP HCCA
CC GO:0071782 endoplasmic reticulum tubular network IEP HCCA
BP GO:0071786 endoplasmic reticulum tubular network organization IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098827 endoplasmic reticulum subcompartment IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 9 66
PLAZA 3.0 Dicots AT5G16840