AT5G17880

Description : disease resistance protein (TIR-NBS-LRR class)

Gene families : OG_01_0000936 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000936_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G17880
Cluster	HCCA: Cluster_21

Target	Alias	Description	ECC score	Gene Family Method
AT2G17060	No alias	Disease resistance protein (TIR-NBS-LRR class) family	0.08	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G19510	No alias	Disease resistance protein (TIR-NBS-LRR class)	0.08	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G19530	No alias	disease resistance protein (TIR-NBS-LRR class) family	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G44870	No alias	Disease resistance protein (TIR-NBS-LRR class) family	0.14	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G45230	No alias	Disease resistance protein (TIR-NBS-LRR class) family	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	IMP	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009639	response to red or far red light	None	Extended
BP	GO:0010114	response to red light	IMP	Interproscan
BP	GO:0042742	defense response to bacterium	IMP	Interproscan
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004407	histone deacetylase activity	IEP	HCCA
MF	GO:0005388	P-type calcium transporter activity	IEP	HCCA
BP	GO:0006071	glycerol metabolic process	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006878	cellular copper ion homeostasis	IEP	HCCA
MF	GO:0008889	glycerophosphodiester phosphodiesterase activity	IEP	HCCA
BP	GO:0009636	response to toxic substance	IEP	HCCA
MF	GO:0015086	cadmium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015434	ABC-type cadmium transporter activity	IEP	HCCA
MF	GO:0015633	ABC-type zinc transporter activity	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0019199	transmembrane receptor protein kinase activity	IEP	HCCA
MF	GO:0019213	deacetylase activity	IEP	HCCA
BP	GO:0019400	alditol metabolic process	IEP	HCCA
MF	GO:0033558	protein deacetylase activity	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
BP	GO:0055069	zinc ion homeostasis	IEP	HCCA
BP	GO:0055070	copper ion homeostasis	IEP	HCCA
MF	GO:0140359	ABC-type transporter activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000157	TIR_dom	18	185
IPR011713	Leu-rich_rpt_3	638	657
IPR002182	NB-ARC	211	432

External Links

PLAZA 3.0 Dicots	AT5G17880