AT5G23570

Description : XS domain-containing protein / XS zinc finger domain-containing protein-related

Gene families : OG_01_0002504 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002504_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G23570
Cluster	HCCA: Cluster_258

Type	GO Term	Name	Evidence	Source
BP	GO:0002376	immune system process	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IDA	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005783	endoplasmic reticulum	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006955	immune response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009615	response to virus	None	Extended
BP	GO:0009616	RNAi-mediated antiviral immune response	IMP	Interproscan
BP	GO:0009616	RNAi-mediated antiviral immune response	RCA	Interproscan
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010025	wax biosynthetic process	IGI	Interproscan
BP	GO:0010050	vegetative phase change	IMP	Interproscan
BP	GO:0010050	vegetative phase change	RCA	Interproscan
BP	GO:0010166	wax metabolic process	None	Extended
BP	GO:0010267	production of ta-siRNAs involved in RNA interference	IMP	Interproscan
BP	GO:0010267	production of ta-siRNAs involved in RNA interference	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010608	posttranscriptional regulation of gene expression	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016441	posttranscriptional gene silencing	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0030422	production of siRNA involved in RNA interference	None	Extended
BP	GO:0031050	dsRNA processing	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035196	production of miRNAs involved in gene silencing by miRNA	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045087	innate immune response	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051607	defense response to virus	IMP	Interproscan
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070918	production of small RNA involved in gene silencing by RNA	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140546	defense response to symbiont	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901568	fatty acid derivative metabolic process	None	Extended
BP	GO:1901570	fatty acid derivative biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0004364	glutathione transferase activity	IEP	HCCA
MF	GO:0004650	polygalacturonase activity	IEP	HCCA
CC	GO:0005667	transcription regulator complex	IEP	HCCA
CC	GO:0005672	transcription factor TFIIA complex	IEP	HCCA
BP	GO:0006301	postreplication repair	IEP	HCCA
BP	GO:0006352	DNA-templated transcription, initiation	IEP	HCCA
BP	GO:0006366	transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006367	transcription initiation from RNA polymerase II promoter	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0009740	gibberellic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009787	regulation of abscisic acid-activated signaling pathway	IEP	HCCA
BP	GO:0009788	negative regulation of abscisic acid-activated signaling pathway	IEP	HCCA
BP	GO:0009958	positive gravitropism	IEP	HCCA
BP	GO:0009968	negative regulation of signal transduction	IEP	HCCA
BP	GO:0010476	gibberellin mediated signaling pathway	IEP	HCCA
BP	GO:0010648	negative regulation of cell communication	IEP	HCCA
MF	GO:0015095	magnesium ion transmembrane transporter activity	IEP	HCCA
BP	GO:0016246	RNA interference	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0023057	negative regulation of signaling	IEP	HCCA
CC	GO:0031371	ubiquitin conjugating enzyme complex	IEP	HCCA
CC	GO:0031372	UBC13-MMS2 complex	IEP	HCCA
CC	GO:0031965	nuclear membrane	IEP	HCCA
BP	GO:0035194	post-transcriptional gene silencing by RNA	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0045454	cell redox homeostasis	IEP	HCCA
BP	GO:0048523	negative regulation of cellular process	IEP	HCCA
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	HCCA
BP	GO:0080188	gene silencing by RNA-directed DNA methylation	IEP	HCCA
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	HCCA
BP	GO:0140458	pre-transcriptional gene silencing by RNA	IEP	HCCA
BP	GO:1901419	regulation of response to alcohol	IEP	HCCA
BP	GO:1901420	negative regulation of response to alcohol	IEP	HCCA
BP	GO:1905957	regulation of cellular response to alcohol	IEP	HCCA
BP	GO:1905958	negative regulation of cellular response to alcohol	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005381	Znf-XS_domain	228	265
IPR005380	XS_domain	299	410

External Links

PLAZA 3.0 Dicots	AT5G23570

AT5G23570

Expression Profile

Co-expression Networks

Functional Annotation