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  5. AT5G24060

AT5G24060


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0002406 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002406_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G24060

Target Alias Description ECC score Gene Family Method Actions
Pp3c17_19250V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
CC GO:0000815 ESCRT III complex IEP HCCA
MF GO:0001716 L-amino-acid oxidase activity IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0004040 amidase activity IEP HCCA
MF GO:0004630 phospholipase D activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004712 protein serine/threonine/tyrosine kinase activity IEP HCCA
MF GO:0004829 threonine-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005677 chromatin silencing complex IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
CC GO:0005798 Golgi-associated vesicle IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006351 transcription, DNA-templated IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006435 threonyl-tRNA aminoacylation IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
BP GO:0006482 protein demethylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006596 polyamine biosynthetic process IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006914 autophagy IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0006986 response to unfolded protein IEP HCCA
BP GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response IEP HCCA
BP GO:0007009 plasma membrane organization IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
BP GO:0007129 homologous chromosome pairing at meiosis IEP HCCA
BP GO:0007155 cell adhesion IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008143 poly(A) binding IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008214 protein dealkylation IEP HCCA
MF GO:0008734 L-aspartate oxidase activity IEP HCCA
MF GO:0008792 arginine decarboxylase activity IEP HCCA
MF GO:0008864 formyltetrahydrofolate deformylase activity IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
MF GO:0009378 four-way junction helicase activity IEP HCCA
BP GO:0009395 phospholipid catabolic process IEP HCCA
BP GO:0009410 response to xenobiotic stimulus IEP HCCA
BP GO:0009435 NAD biosynthetic process IEP HCCA
BP GO:0009445 putrescine metabolic process IEP HCCA
BP GO:0009446 putrescine biosynthetic process IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
CC GO:0009534 chloroplast thylakoid IEP HCCA
BP GO:0009607 response to biotic stimulus IEP HCCA
BP GO:0009608 response to symbiont IEP HCCA
BP GO:0009610 response to symbiotic fungus IEP HCCA
BP GO:0009624 response to nematode IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009668 plastid membrane organization IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009720 detection of hormone stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009726 detection of endogenous stimulus IEP HCCA
BP GO:0009729 detection of brassinosteroid stimulus IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0009738 abscisic acid-activated signaling pathway IEP HCCA
BP GO:0009755 hormone-mediated signaling pathway IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
MF GO:0009927 histidine phosphotransfer kinase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010027 thylakoid membrane organization IEP HCCA
BP GO:0010035 response to inorganic substance IEP HCCA
BP GO:0010205 photoinhibition IEP HCCA
BP GO:0010206 photosystem II repair IEP HCCA
BP GO:0010398 xylogalacturonan metabolic process IEP HCCA
BP GO:0010410 hemicellulose metabolic process IEP HCCA
BP GO:0010413 glucuronoxylan metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
MF GO:0015922 aspartate oxidase activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016485 protein processing IEP HCCA
CC GO:0016514 SWI/SNF complex IEP HCCA
BP GO:0016577 histone demethylation IEP HCCA
CC GO:0016591 RNA polymerase II, holoenzyme IEP HCCA
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP HCCA
BP GO:0016926 protein desumoylation IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP HCCA
BP GO:0019362 pyridine nucleotide metabolic process IEP HCCA
BP GO:0019363 pyridine nucleotide biosynthetic process IEP HCCA
BP GO:0019375 galactolipid biosynthetic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0019900 kinase binding IEP HCCA
MF GO:0019901 protein kinase binding IEP HCCA
BP GO:0022403 cell cycle phase IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0022610 biological adhesion IEP HCCA
CC GO:0030054 cell junction IEP HCCA
BP GO:0030091 protein repair IEP HCCA
CC GO:0030133 transport vesicle IEP HCCA
CC GO:0030135 coated vesicle IEP HCCA
CC GO:0030136 clathrin-coated vesicle IEP HCCA
CC GO:0030140 trans-Golgi network transport vesicle IEP HCCA
BP GO:0030968 endoplasmic reticulum unfolded protein response IEP HCCA
BP GO:0031056 regulation of histone modification IEP HCCA
BP GO:0031058 positive regulation of histone modification IEP HCCA
BP GO:0031060 regulation of histone methylation IEP HCCA
BP GO:0031062 positive regulation of histone methylation IEP HCCA
BP GO:0031109 microtubule polymerization or depolymerization IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
BP GO:0031401 positive regulation of protein modification process IEP HCCA
BP GO:0031425 chloroplast RNA processing IEP HCCA
MF GO:0031490 chromatin DNA binding IEP HCCA
CC GO:0031519 PcG protein complex IEP HCCA
CC GO:0031976 plastid thylakoid IEP HCCA
CC GO:0031977 thylakoid lumen IEP HCCA
CC GO:0031984 organelle subcompartment IEP HCCA
BP GO:0032386 regulation of intracellular transport IEP HCCA
BP GO:0032388 positive regulation of intracellular transport IEP HCCA
MF GO:0032451 demethylase activity IEP HCCA
MF GO:0032452 histone demethylase activity IEP HCCA
MF GO:0032454 histone H3-methyl-lysine-9 demethylase activity IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032776 DNA methylation on cytosine IEP HCCA
BP GO:0032922 circadian regulation of gene expression IEP HCCA
BP GO:0033157 regulation of intracellular protein transport IEP HCCA
BP GO:0033169 histone H3-K9 demethylation IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034308 primary alcohol metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0034976 response to endoplasmic reticulum stress IEP HCCA
MF GO:0035064 methylated histone binding IEP HCCA
MF GO:0035252 UDP-xylosyltransferase activity IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0040029 regulation of gene expression, epigenetic IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0042439 ethanolamine-containing compound metabolic process IEP HCCA
BP GO:0042631 cellular response to water deprivation IEP HCCA
BP GO:0042743 hydrogen peroxide metabolic process IEP HCCA
BP GO:0042744 hydrogen peroxide catabolic process IEP HCCA
BP GO:0042793 plastid transcription IEP HCCA
MF GO:0043138 3'-5' DNA helicase activity IEP HCCA
BP GO:0043155 negative regulation of photosynthesis, light reaction IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043207 response to external biotic stimulus IEP HCCA
MF GO:0043424 protein histidine kinase binding IEP HCCA
BP GO:0044038 cell wall macromolecule biosynthetic process IEP HCCA
BP GO:0044111 formation of structure involved in a symbiotic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044419 biological process involved in interspecies interaction between organisms IEP HCCA
BP GO:0044848 biological phase IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
BP GO:0045491 xylan metabolic process IEP HCCA
BP GO:0045492 xylan biosynthetic process IEP HCCA
BP GO:0045596 negative regulation of cell differentiation IEP HCCA
BP GO:0045893 positive regulation of transcription, DNA-templated IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0045944 positive regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046496 nicotinamide nucleotide metabolic process IEP HCCA
BP GO:0046653 tetrahydrofolate metabolic process IEP HCCA
BP GO:0046785 microtubule polymerization IEP HCCA
BP GO:0046822 regulation of nucleocytoplasmic transport IEP HCCA
BP GO:0046824 positive regulation of nucleocytoplasmic transport IEP HCCA
BP GO:0046825 regulation of protein export from nucleus IEP HCCA
BP GO:0046827 positive regulation of protein export from nucleus IEP HCCA
MF GO:0047412 N-(long-chain-acyl)ethanolamine deacylase activity IEP HCCA
BP GO:0048285 organelle fission IEP HCCA
CC GO:0048471 perinuclear region of cytoplasm IEP HCCA
BP GO:0048497 maintenance of floral organ identity IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0048585 negative regulation of response to stimulus IEP HCCA
BP GO:0048587 regulation of short-day photoperiodism, flowering IEP HCCA
BP GO:0050665 hydrogen peroxide biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051050 positive regulation of transport IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051222 positive regulation of protein transport IEP HCCA
BP GO:0051223 regulation of protein transport IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0051322 anaphase IEP HCCA
BP GO:0051570 regulation of histone H3-K9 methylation IEP HCCA
BP GO:0051574 positive regulation of histone H3-K9 methylation IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0051707 response to other organism IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0052093 formation of specialized structure for nutrient acquisition IEP HCCA
BP GO:0052096 formation of syncytium involving giant cell for nutrient acquisition IEP HCCA
MF GO:0060089 molecular transducer activity IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0060341 regulation of cellular localization IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070076 histone lysine demethylation IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP HCCA
BP GO:0070201 regulation of establishment of protein localization IEP HCCA
BP GO:0070291 N-acylethanolamine metabolic process IEP HCCA
BP GO:0070589 cellular component macromolecule biosynthetic process IEP HCCA
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP HCCA
CC GO:0070603 SWI/SNF superfamily-type complex IEP HCCA
MF GO:0070717 poly-purine tract binding IEP HCCA
BP GO:0070887 cellular response to chemical stimulus IEP HCCA
BP GO:0070919 production of siRNA involved in gene silencing by small RNA IEP HCCA
BP GO:0070988 demethylation IEP HCCA
BP GO:0071229 cellular response to acid chemical IEP HCCA
BP GO:0071365 cellular response to auxin stimulus IEP HCCA
BP GO:0071462 cellular response to water stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:0080036 regulation of cytokinin-activated signaling pathway IEP HCCA
BP GO:0080050 regulation of seed development IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0080188 gene silencing by RNA-directed DNA methylation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090316 positive regulation of intracellular protein transport IEP HCCA
BP GO:0090351 seedling development IEP HCCA
BP GO:0090700 maintenance of plant organ identity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140030 modification-dependent protein binding IEP HCCA
MF GO:0140034 methylation-dependent protein binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140457 protein demethylase activity IEP HCCA
BP GO:0140458 pre-transcriptional gene silencing by RNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1900109 regulation of histone H3-K9 dimethylation IEP HCCA
BP GO:1900111 positive regulation of histone H3-K9 dimethylation IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901522 positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus IEP HCCA
BP GO:1901700 response to oxygen-containing compound IEP HCCA
BP GO:1902347 response to strigolactone IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903409 reactive oxygen species biosynthetic process IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1903829 positive regulation of protein localization IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA
BP GO:1904951 positive regulation of establishment of protein localization IEP HCCA
BP GO:1905156 negative regulation of photosynthesis IEP HCCA
BP GO:2000034 regulation of seed maturation IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
BP GO:2000693 positive regulation of seed maturation IEP HCCA

No InterPro domains available for this sequence

PLAZA 3.0 Dicots AT5G24060