AT5G25220

Description : KNOTTED1-like homeobox gene 3

Gene families : OG_01_0000355 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000355_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G25220

Target	Alias	Description	ECC score	Gene Family Method
AT1G62360	No alias	KNOX/ELK homeobox transcription factor	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G08150	No alias	KNOTTED-like from Arabidopsis thaliana	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_26440V3.1	No alias	KNOTTED1-like homeobox gene 3	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_1550V3.1	No alias	KNOTTED1-like homeobox gene 3	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	IEP	Interproscan
BP	GO:0009593	detection of chemical stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009720	detection of hormone stimulus	None	Extended
BP	GO:0009722	detection of cytokinin stimulus	IEP	Interproscan
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009726	detection of endogenous stimulus	None	Extended
BP	GO:0009735	response to cytokinin	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034097	response to cytokine	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048513	animal organ development	RCA	Interproscan
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051606	detection of stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0070887	cellular response to chemical stimulus	None	Extended
BP	GO:0071310	cellular response to organic substance	None	Extended
BP	GO:0071345	cellular response to cytokine stimulus	IDA	Interproscan
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006857	oligopeptide transport	IEP	HCCA
BP	GO:0015833	peptide transport	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
BP	GO:0042886	amide transport	IEP	HCCA
MF	GO:0046524	sucrose-phosphate synthase activity	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005540	KNOX1	160	200
IPR005539	ELK_dom	322	343
IPR008422	Homeobox_KN_domain	362	401
IPR005541	KNOX2	217	267

External Links

PLAZA 3.0 Dicots	AT5G25220

AT5G25220

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation