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  5. AT5G25290

AT5G25290


Description : F-box family protein with a domain of unknown function (DUF295)


Gene families : OG_01_0000101 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G25290
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
AT1G10110 No alias F-box family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G27580 No alias Protein of unknown function (DUF295) 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G03560 No alias F-box family protein with a domain of unknown function (DUF295) 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G03610 No alias F-box family protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G04810 No alias Protein of unknown function (DUF295) 0.14 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G04830 No alias Protein of unknown function (DUF295) 0.14 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G05970 No alias F-box family protein with a domain of unknown function (DUF295) 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G14500 No alias F-box family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G10820 No alias F-box family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G22060 No alias F-box family protein with a domain of unknown function (DUF295) 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G22165 No alias F-box family protein with a domain of unknown function (DUF295) 0.15 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G22170 No alias F-box family protein with a domain of unknown function (DUF295) 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G38270 No alias F-box family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005575 cellular_component ND Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005337 nucleoside transmembrane transporter activity IEP HCCA
MF GO:0005375 copper ion transmembrane transporter activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005887 integral component of plasma membrane IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008420 RNA polymerase II CTD heptapeptide repeat phosphatase activity IEP HCCA
MF GO:0008519 ammonium transmembrane transporter activity IEP HCCA
BP GO:0010208 pollen wall assembly IEP HCCA
BP GO:0010584 pollen exine formation IEP HCCA
BP GO:0010927 cellular component assembly involved in morphogenesis IEP HCCA
MF GO:0015089 high-affinity copper ion transmembrane transporter activity IEP HCCA
MF GO:0015095 magnesium ion transmembrane transporter activity IEP HCCA
MF GO:0015145 monosaccharide transmembrane transporter activity IEP HCCA
MF GO:0015398 high-affinity secondary active ammonium transmembrane transporter activity IEP HCCA
BP GO:0015695 organic cation transport IEP HCCA
BP GO:0015749 monosaccharide transmembrane transport IEP HCCA
BP GO:0015858 nucleoside transport IEP HCCA
BP GO:0018126 protein hydroxylation IEP HCCA
BP GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline IEP HCCA
BP GO:0019511 peptidyl-proline hydroxylation IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0034219 carbohydrate transmembrane transport IEP HCCA
MF GO:0051119 sugar transmembrane transporter activity IEP HCCA
BP GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain IEP HCCA
BP GO:0072488 ammonium transmembrane transport IEP HCCA
BP GO:0080154 regulation of fertilization IEP HCCA
BP GO:0080155 regulation of double fertilization forming a zygote and endosperm IEP HCCA
InterPro domains Description Start Stop
IPR005174 DUF295 320 374
IPR001810 F-box_dom 13 50
PLAZA 3.0 Dicots AT5G25290