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  5. AT5G25300

AT5G25300


Description : CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT5G25290.1); Has 285 Blast hits to 224 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 282; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).


Gene families : OG_01_0000101 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G25300
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
AT1G10110 No alias F-box family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G27580 No alias Protein of unknown function (DUF295) 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G03560 No alias F-box family protein with a domain of unknown function (DUF295) 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G04810 No alias Protein of unknown function (DUF295) 0.1 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G05970 No alias F-box family protein with a domain of unknown function (DUF295) 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G14500 No alias F-box family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G03726 No alias Protein of unknown function (DUF295) 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G03730 No alias F-box family protein with a domain of unknown function (DUF295) 0.1 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G22345 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G10820 No alias F-box family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G22060 No alias F-box family protein with a domain of unknown function (DUF295) 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G22170 No alias F-box family protein with a domain of unknown function (DUF295) 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G38270 No alias F-box family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005575 cellular_component ND Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005375 copper ion transmembrane transporter activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
MF GO:0008519 ammonium transmembrane transporter activity IEP HCCA
BP GO:0009555 pollen development IEP HCCA
MF GO:0015089 high-affinity copper ion transmembrane transporter activity IEP HCCA
MF GO:0015398 high-affinity secondary active ammonium transmembrane transporter activity IEP HCCA
BP GO:0015695 organic cation transport IEP HCCA
CC GO:0022627 cytosolic small ribosomal subunit IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
BP GO:0048229 gametophyte development IEP HCCA
BP GO:0072488 ammonium transmembrane transport IEP HCCA
BP GO:0080154 regulation of fertilization IEP HCCA
BP GO:0080155 regulation of double fertilization forming a zygote and endosperm IEP HCCA
InterPro domains Description Start Stop
IPR001810 F-box_dom 413 442
PLAZA 3.0 Dicots AT5G25300