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AT5G26040


Description : histone deacetylase 2


Gene families : OG_01_0004631 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0004631_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G26040
Cluster HCCA: Cluster_244

Target Alias Description ECC score Gene Family Method Actions
Zci_06126.1 No alias class-III histone deacetylase 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0004407 histone deacetylase activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000373 Group II intron splicing IEP HCCA
MF GO:0003933 GTP cyclohydrolase activity IEP HCCA
MF GO:0003935 GTP cyclohydrolase II activity IEP HCCA
MF GO:0004103 choline kinase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004707 MAP kinase activity IEP HCCA
MF GO:0005244 voltage-gated ion channel activity IEP HCCA
MF GO:0005249 voltage-gated potassium channel activity IEP HCCA
MF GO:0005267 potassium channel activity IEP HCCA
CC GO:0005654 nucleoplasm IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006771 riboflavin metabolic process IEP HCCA
BP GO:0007623 circadian rhythm IEP HCCA
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP HCCA
MF GO:0009041 uridylate kinase activity IEP HCCA
BP GO:0009231 riboflavin biosynthetic process IEP HCCA
BP GO:0009269 response to desiccation IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
MF GO:0009815 1-aminocyclopropane-1-carboxylate oxidase activity IEP HCCA
BP GO:0010222 stem vascular tissue pattern formation IEP HCCA
BP GO:0010378 temperature compensation of the circadian clock IEP HCCA
MF GO:0015271 outward rectifier potassium channel activity IEP HCCA
CC GO:0016602 CCAAT-binding factor complex IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0019205 nucleobase-containing compound kinase activity IEP HCCA
MF GO:0019238 cyclohydrolase activity IEP HCCA
MF GO:0022832 voltage-gated channel activity IEP HCCA
MF GO:0022843 voltage-gated cation channel activity IEP HCCA
BP GO:0042542 response to hydrogen peroxide IEP HCCA
BP GO:0042726 flavin-containing compound metabolic process IEP HCCA
BP GO:0042727 flavin-containing compound biosynthetic process IEP HCCA
BP GO:0048511 rhythmic process IEP HCCA
BP GO:0048571 long-day photoperiodism IEP HCCA
BP GO:0048574 long-day photoperiodism, flowering IEP HCCA
BP GO:0048578 positive regulation of long-day photoperiodism, flowering IEP HCCA
BP GO:0048586 regulation of long-day photoperiodism, flowering IEP HCCA
MF GO:0050145 nucleoside monophosphate kinase activity IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
BP GO:2000028 regulation of photoperiodism, flowering IEP HCCA
InterPro domains Description Start Stop
IPR023801 His_deacetylse_dom 208 341
IPR023801 His_deacetylse_dom 105 205
PLAZA 3.0 Dicots AT5G26040