AT5G27130

Description : AGAMOUS-like 39

Gene families : OG_01_0001056 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001056_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G27130
Cluster	HCCA: Cluster_54

Target	Alias	Description	ECC score	Gene Family Method
AT1G48150	No alias	MADS-box transcription factor family protein	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G50780	No alias	2Fe-2S ferredoxin-like superfamily protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G60920	No alias	AGAMOUS-like 55	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G12510	No alias	MADS-box family protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G14530	No alias	BEST Arabidopsis thaliana protein match is: AGAMOUS-like...	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G49490	No alias	AGAMOUS-like 83	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000374	Group III intron splicing	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0003964	RNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0004525	ribonuclease III activity	IEP	HCCA
BP	GO:0006278	RNA-dependent DNA biosynthetic process	IEP	HCCA
BP	GO:0030198	extracellular matrix organization	IEP	HCCA
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	HCCA
BP	GO:0043062	extracellular structure organization	IEP	HCCA
BP	GO:0051026	chiasma assembly	IEP	HCCA
BP	GO:0071897	DNA biosynthetic process	IEP	HCCA
BP	GO:0090351	seedling development	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	23	63

External Links

PLAZA 3.0 Dicots	AT5G27130