AT5G27750

Description : F-box/FBD-like domains containing protein

Gene families : OG_01_0000057 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000057_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G27750
Cluster	HCCA: Cluster_24

Target	Alias	Description	ECC score	Gene Family Method
AT1G32020	No alias	F-box family protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G60400	No alias	F-box/RNI-like superfamily protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G66640	No alias	RNI-like superfamily protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G78760	No alias	F-box/RNI-like superfamily protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G22600	No alias	FBD / Leucine Rich Repeat domains containing protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G44940	No alias	F-box/RNI-like superfamily protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G44970	No alias	Protein with RNI-like/FBD-like domains	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G53840	No alias	F-box/RNI-like/FBD-like domains-containing protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
BP	GO:0000278	mitotic cell cycle	RCA	Interproscan
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	None	Extended
BP	GO:0006396	RNA processing	RCA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006479	protein methylation	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007049	cell cycle	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009410	response to xenobiotic stimulus	RCA	Interproscan
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009639	response to red or far red light	None	Extended
BP	GO:0009640	photomorphogenesis	RCA	Interproscan
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	RCA	Interproscan
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016571	histone methylation	RCA	Interproscan
BP	GO:0016579	protein deubiquitination	RCA	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0045893	positive regulation of transcription, DNA-templated	RCA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	RCA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0003872	6-phosphofructokinase activity	IEP	HCCA
MF	GO:0003886	DNA (cytosine-5-)-methyltransferase activity	IEP	HCCA
MF	GO:0003983	UTP:glucose-1-phosphate uridylyltransferase activity	IEP	HCCA
MF	GO:0004177	aminopeptidase activity	IEP	HCCA
MF	GO:0004609	phosphatidylserine decarboxylase activity	IEP	HCCA
CC	GO:0005945	6-phosphofructokinase complex	IEP	HCCA
BP	GO:0006011	UDP-glucose metabolic process	IEP	HCCA
BP	GO:0006323	DNA packaging	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0007568	aging	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
CC	GO:0008278	cohesin complex	IEP	HCCA
MF	GO:0008443	phosphofructokinase activity	IEP	HCCA
BP	GO:0008608	attachment of spindle microtubules to kinetochore	IEP	HCCA
MF	GO:0009008	DNA-methyltransferase activity	IEP	HCCA
BP	GO:0010032	meiotic chromosome condensation	IEP	HCCA
BP	GO:0010047	fruit dehiscence	IEP	HCCA
BP	GO:0010424	DNA methylation on cytosine within a CG sequence	IEP	HCCA
MF	GO:0010428	methyl-CpNpG binding	IEP	HCCA
MF	GO:0010429	methyl-CpNpN binding	IEP	HCCA
MF	GO:0010491	UTP:arabinose-1-phosphate uridylyltransferase activity	IEP	HCCA
BP	GO:0010528	regulation of transposition	IEP	HCCA
BP	GO:0010529	negative regulation of transposition	IEP	HCCA
MF	GO:0017103	UTP:galactose-1-phosphate uridylyltransferase activity	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0030261	chromosome condensation	IEP	HCCA
BP	GO:0031445	regulation of heterochromatin assembly	IEP	HCCA
BP	GO:0031453	positive regulation of heterochromatin assembly	IEP	HCCA
BP	GO:0031507	heterochromatin assembly	IEP	HCCA
BP	GO:0032776	DNA methylation on cytosine	IEP	HCCA
BP	GO:0033356	UDP-L-arabinose metabolic process	IEP	HCCA
MF	GO:0035197	siRNA binding	IEP	HCCA
BP	GO:0040029	regulation of gene expression, epigenetic	IEP	HCCA
BP	GO:0044089	positive regulation of cellular component biogenesis	IEP	HCCA
BP	GO:0045490	pectin catabolic process	IEP	HCCA
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	HCCA
BP	GO:0046398	UDP-glucuronate metabolic process	IEP	HCCA
MF	GO:0047268	galactinol-raffinose galactosyltransferase activity	IEP	HCCA
MF	GO:0047338	UTP:xylose-1-phosphate uridylyltransferase activity	IEP	HCCA
MF	GO:0047350	glucuronate-1-phosphate uridylyltransferase activity	IEP	HCCA
BP	GO:0048240	sperm capacitation	IEP	HCCA
BP	GO:0048444	floral organ morphogenesis	IEP	HCCA
BP	GO:0051177	meiotic sister chromatid cohesion	IEP	HCCA
BP	GO:0051316	attachment of spindle microtubules to kinetochore involved in meiotic chromosome segregation	IEP	HCCA
BP	GO:0051455	monopolar spindle attachment to meiosis I kinetochore	IEP	HCCA
MF	GO:0051748	UTP-monosaccharide-1-phosphate uridylyltransferase activity	IEP	HCCA
BP	GO:0051754	meiotic sister chromatid cohesion, centromeric	IEP	HCCA
BP	GO:0052573	UDP-D-galactose metabolic process	IEP	HCCA
BP	GO:0060341	regulation of cellular localization	IEP	HCCA
MF	GO:0061980	regulatory RNA binding	IEP	HCCA
MF	GO:0070569	uridylyltransferase activity	IEP	HCCA
BP	GO:0070601	centromeric sister chromatid cohesion	IEP	HCCA
BP	GO:0070828	heterochromatin organization	IEP	HCCA
BP	GO:0080154	regulation of fertilization	IEP	HCCA
BP	GO:0080155	regulation of double fertilization forming a zygote and endosperm	IEP	HCCA
BP	GO:0080188	gene silencing by RNA-directed DNA methylation	IEP	HCCA
BP	GO:0090308	regulation of DNA methylation-dependent heterochromatin assembly	IEP	HCCA
BP	GO:0090309	positive regulation of DNA methylation-dependent heterochromatin assembly	IEP	HCCA
BP	GO:0090697	post-embryonic plant organ morphogenesis	IEP	HCCA
BP	GO:0120261	regulation of heterochromatin organization	IEP	HCCA
BP	GO:0120263	positive regulation of heterochromatin organization	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
BP	GO:0140458	pre-transcriptional gene silencing by RNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1902275	regulation of chromatin organization	IEP	HCCA
BP	GO:1905269	positive regulation of chromatin organization	IEP	HCCA
BP	GO:2000008	regulation of protein localization to cell surface	IEP	HCCA
BP	GO:2001252	positive regulation of chromosome organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001810	F-box_dom	6	42
IPR006566	FBD	381	423
IPR013101	Leu-rich_rpt_2	163	188

External Links

PLAZA 3.0 Dicots	AT5G27750

AT5G27750

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation