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  5. AT5G28450

AT5G28450


Description : Chlorophyll A-B binding family protein


Gene families : OG_01_0000685 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000685_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G28450
Cluster HCCA: Cluster_261

Target Alias Description ECC score Gene Family Method Actions
Cre10.g452050 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp8g13180.1 No alias component LHCa2 of LHC-I complex 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c10_25360V3.1 No alias photosystem I light harvesting complex gene 2 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c10_25371V3.1 No alias photosystem I light harvesting complex gene 2 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c10_25415V3.1 No alias photosystem I light harvesting complex gene 2 0.1 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c10_25450V3.1 No alias photosystem I light harvesting complex gene 2 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c12_19200V3.1 No alias photosystem I light harvesting complex gene 2 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c20_23240V3.1 No alias photosystem I light harvesting complex gene 2 0.11 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_13084.1 No alias component LHCa2 of LHC-I complex 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0009507 chloroplast ISM Interproscan
BP GO:0015979 photosynthesis ISS Interproscan
MF GO:0016168 chlorophyll binding ISS Interproscan
CC GO:0030076 light-harvesting complex ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
BP GO:0000097 sulfur amino acid biosynthetic process IEP HCCA
MF GO:0004332 fructose-bisphosphate aldolase activity IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006520 cellular amino acid metabolic process IEP HCCA
BP GO:0006534 cysteine metabolic process IEP HCCA
BP GO:0008652 cellular amino acid biosynthetic process IEP HCCA
MF GO:0008794 arsenate reductase (glutaredoxin) activity IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009070 serine family amino acid biosynthetic process IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
CC GO:0009526 plastid envelope IEP HCCA
CC GO:0009534 chloroplast thylakoid IEP HCCA
CC GO:0009535 chloroplast thylakoid membrane IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
BP GO:0009637 response to blue light IEP HCCA
BP GO:0009639 response to red or far red light IEP HCCA
BP GO:0009718 anthocyanin-containing compound biosynthetic process IEP HCCA
BP GO:0009735 response to cytokinin IEP HCCA
BP GO:0009765 photosynthesis, light harvesting IEP HCCA
BP GO:0009768 photosynthesis, light harvesting in photosystem I IEP HCCA
BP GO:0009769 photosynthesis, light harvesting in photosystem II IEP HCCA
CC GO:0009782 photosystem I antenna complex IEP HCCA
CC GO:0009783 photosystem II antenna complex IEP HCCA
CC GO:0009941 chloroplast envelope IEP HCCA
BP GO:0010114 response to red light IEP HCCA
BP GO:0010155 regulation of proton transport IEP HCCA
BP GO:0010196 nonphotochemical quenching IEP HCCA
BP GO:0010218 response to far red light IEP HCCA
CC GO:0010287 plastoglobule IEP HCCA
CC GO:0016020 membrane IEP HCCA
CC GO:0016602 CCAAT-binding factor complex IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
BP GO:0019344 cysteine biosynthetic process IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
MF GO:0030611 arsenate reductase activity IEP HCCA
MF GO:0030613 oxidoreductase activity, acting on phosphorus or arsenic in donors IEP HCCA
MF GO:0030614 oxidoreductase activity, acting on phosphorus or arsenic in donors, disulfide as acceptor IEP HCCA
CC GO:0031012 extracellular matrix IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031967 organelle envelope IEP HCCA
CC GO:0031975 envelope IEP HCCA
CC GO:0031976 plastid thylakoid IEP HCCA
CC GO:0031984 organelle subcompartment IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
CC GO:0042170 plastid membrane IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046283 anthocyanin-containing compound metabolic process IEP HCCA
CC GO:0055035 plastid thylakoid membrane IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
BP GO:1904062 regulation of cation transmembrane transport IEP HCCA
BP GO:1990066 energy quenching IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 87 143
PLAZA 3.0 Dicots AT5G28450