AT5G28650

Description : WRKY DNA-binding protein 74

Gene families : OG_01_0000256 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000256_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G28650
Cluster	HCCA: Cluster_51

Target	Alias	Description	ECC score	Gene Family Method	Actions
Zci_02214.1	No alias	transcription factor (WRKY)	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005516	calmodulin binding	IDA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005634	nucleus	IC	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000182	rDNA binding	IEP	HCCA
BP	GO:0000373	Group II intron splicing	IEP	HCCA
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
CC	GO:0000798	nuclear cohesin complex	IEP	HCCA
MF	GO:0003860	3-hydroxyisobutyryl-CoA hydrolase activity	IEP	HCCA
MF	GO:0003905	alkylbase DNA N-glycosylase activity	IEP	HCCA
MF	GO:0004300	enoyl-CoA hydratase activity	IEP	HCCA
MF	GO:0004519	endonuclease activity	IEP	HCCA
MF	GO:0004564	beta-fructofuranosidase activity	IEP	HCCA
MF	GO:0004575	sucrose alpha-glucosidase activity	IEP	HCCA
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	HCCA
MF	GO:0004722	protein serine/threonine phosphatase activity	IEP	HCCA
CC	GO:0005623	obsolete cell	IEP	HCCA
BP	GO:0005987	sucrose catabolic process	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006475	internal protein amino acid acetylation	IEP	HCCA
CC	GO:0008278	cohesin complex	IEP	HCCA
MF	GO:0008419	RNA lariat debranching enzyme activity	IEP	HCCA
BP	GO:0008535	respiratory chain complex IV assembly	IEP	HCCA
MF	GO:0008725	DNA-3-methyladenine glycosylase activity	IEP	HCCA
BP	GO:0009313	oligosaccharide catabolic process	IEP	HCCA
BP	GO:0009648	photoperiodism	IEP	HCCA
BP	GO:0009649	entrainment of circadian clock	IEP	HCCA
BP	GO:0009685	gibberellin metabolic process	IEP	HCCA
BP	GO:0009903	chloroplast avoidance movement	IEP	HCCA
BP	GO:0009961	response to 1-aminocyclopropane-1-carboxylic acid	IEP	HCCA
MF	GO:0015203	polyamine transmembrane transporter activity	IEP	HCCA
BP	GO:0015846	polyamine transport	IEP	HCCA
BP	GO:0016101	diterpenoid metabolic process	IEP	HCCA
MF	GO:0016289	CoA hydrolase activity	IEP	HCCA
CC	GO:0016514	SWI/SNF complex	IEP	HCCA
BP	GO:0016573	histone acetylation	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA
MF	GO:0016882	cyclo-ligase activity	IEP	HCCA
BP	GO:0017004	cytochrome complex assembly	IEP	HCCA
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	HCCA
BP	GO:0018394	peptidyl-lysine acetylation	IEP	HCCA
MF	GO:0019104	DNA N-glycosylase activity	IEP	HCCA
MF	GO:0030272	5-formyltetrahydrofolate cyclo-ligase activity	IEP	HCCA
BP	GO:0043153	entrainment of circadian clock by photoperiod	IEP	HCCA
BP	GO:0043200	response to amino acid	IEP	HCCA
BP	GO:0043543	protein acylation	IEP	HCCA
MF	GO:0043733	DNA-3-methylbase glycosylase activity	IEP	HCCA
MF	GO:0045543	gibberellin 2-beta-dioxygenase activity	IEP	HCCA
BP	GO:0046352	disaccharide catabolic process	IEP	HCCA
BP	GO:0046653	tetrahydrofolate metabolic process	IEP	HCCA
BP	GO:0048573	photoperiodism, flowering	IEP	HCCA
MF	GO:0052635	C-20 gibberellin 2-beta-dioxygenase activity	IEP	HCCA
CC	GO:0070603	SWI/SNF superfamily-type complex	IEP	HCCA
MF	GO:0090599	alpha-glucosidase activity	IEP	HCCA
BP	GO:0097031	obsolete mitochondrial respiratory chain complex I biogenesis	IEP	HCCA
BP	GO:0097034	obsolete mitochondrial respiratory chain complex IV biogenesis	IEP	HCCA
CC	GO:1904949	ATPase complex	IEP	HCCA
MF	GO:1990837	sequence-specific double-stranded DNA binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003657	WRKY_dom	263	319
IPR018872	Zn-cluster-dom	222	259

External Links

PLAZA 3.0 Dicots	AT5G28650

AT5G28650

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation