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  5. AT5G37560

AT5G37560


Description : RING/U-box superfamily protein


Gene families : OG_01_0000252 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G37560
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
AT2G26130 No alias RING/U-box protein with C6HC-type zinc finger 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G43180 No alias RING/U-box superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45470 No alias IBR domain containing protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45570 No alias RING/U-box protein with C6HC-type zinc finger domain 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0005351 carbohydrate:proton symporter activity IEP HCCA
MF GO:0005402 carbohydrate:cation symporter activity IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
BP GO:0009299 mRNA transcription IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015144 carbohydrate transmembrane transporter activity IEP HCCA
MF GO:0015293 symporter activity IEP HCCA
MF GO:0015294 solute:cation symporter activity IEP HCCA
MF GO:0015295 solute:proton symporter activity IEP HCCA
CC GO:0031350 intrinsic component of plastid membrane IEP HCCA
CC GO:0031351 integral component of plastid membrane IEP HCCA
InterPro domains Description Start Stop
IPR002156 RNaseH_domain 59 147
IPR002867 IBR_dom 249 314
IPR002867 IBR_dom 329 383
PLAZA 3.0 Dicots AT5G37560