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AT5G37570


Description : Pentatricopeptide repeat (PPR-like) superfamily protein


Gene families : OG_01_0008145 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0008145_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G37570
Cluster HCCA: Cluster_232


Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
BP GO:0000266 mitochondrial fission IEP HCCA
BP GO:0000491 small nucleolar ribonucleoprotein complex assembly IEP HCCA
BP GO:0000959 mitochondrial RNA metabolic process IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0007005 mitochondrion organization IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP HCCA
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009553 embryo sac development IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
BP GO:0009561 megagametogenesis IEP HCCA
BP GO:0010928 regulation of auxin mediated signaling pathway IEP HCCA
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
BP GO:0030488 tRNA methylation IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
BP GO:0031538 negative regulation of anthocyanin metabolic process IEP HCCA
BP GO:0032784 regulation of DNA-templated transcription, elongation IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0035265 organ growth IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0048449 floral organ formation IEP HCCA
BP GO:0048530 fruit morphogenesis IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0060321 acceptance of pollen IEP HCCA
BP GO:0071215 cellular response to abscisic acid stimulus IEP HCCA
BP GO:0071396 cellular response to lipid IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
BP GO:0080156 mitochondrial mRNA modification IEP HCCA
BP GO:0080178 5-carbamoylmethyl uridine residue modification IEP HCCA
BP GO:0097306 cellular response to alcohol IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1900864 mitochondrial RNA modification IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:2000024 regulation of leaf development IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 177 206
IPR002885 Pentatricopeptide_repeat 76 104
IPR002885 Pentatricopeptide_repeat 149 175
IPR002885 Pentatricopeptide_repeat 239 263
IPR002885 Pentatricopeptide_repeat 209 238
IPR002885 Pentatricopeptide_repeat 444 468
IPR002885 Pentatricopeptide_repeat 268 305
IPR002885 Pentatricopeptide_repeat 370 416
PLAZA 3.0 Dicots AT5G37570