AT5G39270

Description : expansin A22

Gene families : OG_01_0000011 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000011_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G39270
Cluster	HCCA: Cluster_71

Target	Alias	Description	ECC score	Gene Family Method
AT1G69530	No alias	expansin A1	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G02260	No alias	expansin A9	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G39260	No alias	expansin A21	0.1	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G39300	No alias	expansin A25	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g22700.1	No alias	alpha-class expansin	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g24230.1	No alias	alpha-class expansin	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp3g09770.1	No alias	alpha-class expansin	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009664	plant-type cell wall organization	None	Extended
BP	GO:0009826	unidimensional cell growth	ISS	Interproscan
BP	GO:0009826	unidimensional cell growth	NAS	Interproscan
BP	GO:0009827	plant-type cell wall modification	None	Extended
BP	GO:0009828	plant-type cell wall loosening	ISS	Interproscan
BP	GO:0009828	plant-type cell wall loosening	NAS	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042545	cell wall modification	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005345	purine nucleobase transmembrane transporter activity	IEP	HCCA
BP	GO:0006885	regulation of pH	IEP	HCCA
BP	GO:0007035	vacuolar acidification	IEP	HCCA
BP	GO:0009831	plant-type cell wall modification involved in multidimensional cell growth	IEP	HCCA
BP	GO:0010023	proanthocyanidin biosynthetic process	IEP	HCCA
MF	GO:0015205	nucleobase transmembrane transporter activity	IEP	HCCA
MF	GO:0019829	ATPase-coupled cation transmembrane transporter activity	IEP	HCCA
BP	GO:0030004	cellular monovalent inorganic cation homeostasis	IEP	HCCA
BP	GO:0030641	regulation of cellular pH	IEP	HCCA
BP	GO:0036294	cellular response to decreased oxygen levels	IEP	HCCA
BP	GO:0042547	cell wall modification involved in multidimensional cell growth	IEP	HCCA
BP	GO:0045851	pH reduction	IEP	HCCA
BP	GO:0050829	defense response to Gram-negative bacterium	IEP	HCCA
BP	GO:0051452	intracellular pH reduction	IEP	HCCA
BP	GO:0051453	regulation of intracellular pH	IEP	HCCA
BP	GO:0055067	monovalent inorganic cation homeostasis	IEP	HCCA
BP	GO:0071453	cellular response to oxygen levels	IEP	HCCA
BP	GO:0071456	cellular response to hypoxia	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR009009	RlpA-like_DPBB	77	160
IPR007117	Expansin_CBD	171	248

External Links

PLAZA 3.0 Dicots	AT5G39270