AT5G39660

Description : cycling DOF factor 2

Gene families : OG_01_0000085 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000085_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G39660
Cluster	HCCA: Cluster_11

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	HCCA
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	HCCA
MF	GO:0004722	protein serine/threonine phosphatase activity	IEP	HCCA
CC	GO:0005834	heterotrimeric G-protein complex	IEP	HCCA
BP	GO:0006914	autophagy	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
BP	GO:0009410	response to xenobiotic stimulus	IEP	HCCA
BP	GO:0009605	response to external stimulus	IEP	HCCA
BP	GO:0009607	response to biotic stimulus	IEP	HCCA
BP	GO:0009608	response to symbiont	IEP	HCCA
BP	GO:0009610	response to symbiotic fungus	IEP	HCCA
BP	GO:0009612	response to mechanical stimulus	IEP	HCCA
BP	GO:0009620	response to fungus	IEP	HCCA
BP	GO:0009636	response to toxic substance	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0010014	meristem initiation	IEP	HCCA
BP	GO:0010029	regulation of seed germination	IEP	HCCA
BP	GO:0010071	root meristem specification	IEP	HCCA
BP	GO:0010074	maintenance of meristem identity	IEP	HCCA
BP	GO:0010078	maintenance of root meristem identity	IEP	HCCA
BP	GO:0010188	response to microbial phytotoxin	IEP	HCCA
BP	GO:0010310	regulation of hydrogen peroxide metabolic process	IEP	HCCA
BP	GO:0010492	maintenance of shoot apical meristem identity	IEP	HCCA
BP	GO:0016032	viral process	IEP	HCCA
BP	GO:0019722	calcium-mediated signaling	IEP	HCCA
BP	GO:0019827	stem cell population maintenance	IEP	HCCA
BP	GO:0019932	second-messenger-mediated signaling	IEP	HCCA
BP	GO:0030968	endoplasmic reticulum unfolded protein response	IEP	HCCA
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	HCCA
MF	GO:0042802	identical protein binding	IEP	HCCA
MF	GO:0042803	protein homodimerization activity	IEP	HCCA
BP	GO:0043207	response to external biotic stimulus	IEP	HCCA
BP	GO:0044000	movement in host	IEP	HCCA
BP	GO:0044403	biological process involved in symbiotic interaction	IEP	HCCA
BP	GO:0044419	biological process involved in interspecies interaction between organisms	IEP	HCCA
BP	GO:0044766	multi-organism transport	IEP	HCCA
BP	GO:0046739	transport of virus in multicellular host	IEP	HCCA
BP	GO:0046740	transport of virus in host, cell to cell	IEP	HCCA
BP	GO:0046794	transport of virus	IEP	HCCA
MF	GO:0046982	protein heterodimerization activity	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
BP	GO:0051701	biological process involved in interaction with host	IEP	HCCA
BP	GO:0051704	multi-organism process	IEP	HCCA
BP	GO:0051707	response to other organism	IEP	HCCA
BP	GO:0052126	movement in host environment	IEP	HCCA
BP	GO:0061919	process utilizing autophagic mechanism	IEP	HCCA
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	IEP	HCCA
BP	GO:0080022	primary root development	IEP	HCCA
BP	GO:0090421	embryonic meristem initiation	IEP	HCCA
BP	GO:0098727	maintenance of cell number	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA
BP	GO:1900140	regulation of seedling development	IEP	HCCA
BP	GO:1902579	multi-organism localization	IEP	HCCA
BP	GO:1902586	multi-organism intercellular transport	IEP	HCCA
CC	GO:1905360	GTPase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	136	192

External Links

PLAZA 3.0 Dicots	AT5G39660

AT5G39660

Expression Profile

Co-expression Networks

Functional Annotation