AT5G39950

Description : thioredoxin 2

Gene families : OG_01_0000273 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000273_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G39950
Cluster	HCCA: Cluster_123

Target	Alias	Description	ECC score	Gene Family Method
Cre05.g248500	No alias	Redox homeostasis.cytosol/mitochondrion/nucleus redox...	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre09.g391900	No alias	Redox homeostasis.cytosol/mitochondrion/nucleus redox...	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_28390V3.1	No alias	thioredoxin H-type 1	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
BP	GO:0000103	sulfate assimilation	IGI	Interproscan
BP	GO:0000280	nuclear division	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005739	mitochondrion	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005829	cytosol	TAS	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006497	protein lipidation	None	Extended
BP	GO:0006498	N-terminal protein lipidation	None	Extended
BP	GO:0006499	N-terminal protein myristoylation	IDA	Interproscan
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0006997	nucleus organization	None	Extended
BP	GO:0007000	nucleolus organization	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	None	Extended
MF	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	IDA	Interproscan
BP	GO:0018377	protein myristoylation	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0031365	N-terminal protein amino acid modification	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043543	protein acylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0048285	organelle fission	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000785	chromatin	IEP	HCCA
MF	GO:0004439	phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	IEP	HCCA
MF	GO:0004784	superoxide dismutase activity	IEP	HCCA
CC	GO:0005681	spliceosomal complex	IEP	HCCA
CC	GO:0005747	mitochondrial respiratory chain complex I	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
CC	GO:0005876	spindle microtubule	IEP	HCCA
CC	GO:0005881	cytoplasmic microtubule	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0006623	protein targeting to vacuole	IEP	HCCA
BP	GO:0006650	glycerophospholipid metabolic process	IEP	HCCA
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
BP	GO:0006801	superoxide metabolic process	IEP	HCCA
BP	GO:0007030	Golgi organization	IEP	HCCA
BP	GO:0007034	vacuolar transport	IEP	HCCA
BP	GO:0007276	gamete generation	IEP	HCCA
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	HCCA
MF	GO:0008794	arsenate reductase (glutaredoxin) activity	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009062	fatty acid catabolic process	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009411	response to UV	IEP	HCCA
CC	GO:0009574	preprophase band	IEP	HCCA
BP	GO:0009593	detection of chemical stimulus	IEP	HCCA
BP	GO:0009853	photorespiration	IEP	HCCA
BP	GO:0009894	regulation of catabolic process	IEP	HCCA
BP	GO:0009896	positive regulation of catabolic process	IEP	HCCA
CC	GO:0010005	cortical microtubule, transverse to long axis	IEP	HCCA
BP	GO:0010109	regulation of photosynthesis	IEP	HCCA
BP	GO:0010193	response to ozone	IEP	HCCA
MF	GO:0010997	anaphase-promoting complex binding	IEP	HCCA
BP	GO:0016042	lipid catabolic process	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
BP	GO:0016197	endosomal transport	IEP	HCCA
MF	GO:0016721	oxidoreductase activity, acting on superoxide radicals as acceptor	IEP	HCCA
BP	GO:0019430	removal of superoxide radicals	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
MF	GO:0020037	heme binding	IEP	HCCA
MF	GO:0030611	arsenate reductase activity	IEP	HCCA
MF	GO:0030613	oxidoreductase activity, acting on phosphorus or arsenic in donors	IEP	HCCA
MF	GO:0030614	oxidoreductase activity, acting on phosphorus or arsenic in donors, disulfide as acceptor	IEP	HCCA
BP	GO:0030865	cortical cytoskeleton organization	IEP	HCCA
CC	GO:0030964	NADH dehydrogenase complex	IEP	HCCA
BP	GO:0031122	cytoplasmic microtubule organization	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
BP	GO:0032875	regulation of DNA endoreduplication	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
MF	GO:0034593	phosphatidylinositol bisphosphate phosphatase activity	IEP	HCCA
MF	GO:0034595	phosphatidylinositol phosphate 5-phosphatase activity	IEP	HCCA
BP	GO:0034599	cellular response to oxidative stress	IEP	HCCA
BP	GO:0034614	cellular response to reactive oxygen species	IEP	HCCA
BP	GO:0034622	cellular protein-containing complex assembly	IEP	HCCA
BP	GO:0034644	cellular response to UV	IEP	HCCA
BP	GO:0035195	gene silencing by miRNA	IEP	HCCA
BP	GO:0035966	response to topologically incorrect protein	IEP	HCCA
BP	GO:0042176	regulation of protein catabolic process	IEP	HCCA
BP	GO:0043094	cellular metabolic compound salvage	IEP	HCCA
BP	GO:0043248	proteasome assembly	IEP	HCCA
BP	GO:0043405	regulation of MAP kinase activity	IEP	HCCA
BP	GO:0043407	negative regulation of MAP kinase activity	IEP	HCCA
BP	GO:0043408	regulation of MAPK cascade	IEP	HCCA
BP	GO:0043409	negative regulation of MAPK cascade	IEP	HCCA
BP	GO:0043622	cortical microtubule organization	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0043933	protein-containing complex subunit organization	IEP	HCCA
BP	GO:0044242	cellular lipid catabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0044282	small molecule catabolic process	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
BP	GO:0045017	glycerolipid biosynthetic process	IEP	HCCA
CC	GO:0045271	respiratory chain complex I	IEP	HCCA
BP	GO:0045732	positive regulation of protein catabolic process	IEP	HCCA
BP	GO:0045926	negative regulation of growth	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046164	alcohol catabolic process	IEP	HCCA
BP	GO:0046174	polyol catabolic process	IEP	HCCA
BP	GO:0046434	organophosphate catabolic process	IEP	HCCA
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	HCCA
BP	GO:0046486	glycerolipid metabolic process	IEP	HCCA
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	HCCA
BP	GO:0046620	regulation of organ growth	IEP	HCCA
BP	GO:0046621	negative regulation of organ growth	IEP	HCCA
BP	GO:0046688	response to copper ion	IEP	HCCA
BP	GO:0046838	phosphorylated carbohydrate dephosphorylation	IEP	HCCA
BP	GO:0046855	inositol phosphate dephosphorylation	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0048445	carpel morphogenesis	IEP	HCCA
BP	GO:0048640	negative regulation of developmental growth	IEP	HCCA
BP	GO:0048767	root hair elongation	IEP	HCCA
BP	GO:0051211	anisotropic cell growth	IEP	HCCA
BP	GO:0051247	positive regulation of protein metabolic process	IEP	HCCA
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	HCCA
BP	GO:0051775	response to redox state	IEP	HCCA
BP	GO:0051776	detection of redox state	IEP	HCCA
BP	GO:0051788	response to misfolded protein	IEP	HCCA
MF	GO:0052866	phosphatidylinositol phosphate phosphatase activity	IEP	HCCA
CC	GO:0055028	cortical microtubule	IEP	HCCA
BP	GO:0062197	cellular response to chemical stress	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0070887	cellular response to chemical stimulus	IEP	HCCA
BP	GO:0071214	cellular response to abiotic stimulus	IEP	HCCA
BP	GO:0071280	cellular response to copper ion	IEP	HCCA
BP	GO:0071322	cellular response to carbohydrate stimulus	IEP	HCCA
BP	GO:0071324	cellular response to disaccharide stimulus	IEP	HCCA
BP	GO:0071329	cellular response to sucrose stimulus	IEP	HCCA
BP	GO:0071457	cellular response to ozone	IEP	HCCA
BP	GO:0071470	cellular response to osmotic stress	IEP	HCCA
BP	GO:0071472	cellular response to salt stress	IEP	HCCA
BP	GO:0071484	cellular response to light intensity	IEP	HCCA
BP	GO:0071493	cellular response to UV-B	IEP	HCCA
BP	GO:0071545	inositol phosphate catabolic process	IEP	HCCA
BP	GO:0072329	monocarboxylic acid catabolic process	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072665	protein localization to vacuole	IEP	HCCA
BP	GO:0072666	establishment of protein localization to vacuole	IEP	HCCA
BP	GO:0080129	proteasome core complex assembly	IEP	HCCA
BP	GO:0090329	regulation of DNA-dependent DNA replication	IEP	HCCA
BP	GO:0098754	detoxification	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:0098798	mitochondrial protein-containing complex	IEP	HCCA
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	HCCA
CC	GO:0098803	respiratory chain complex	IEP	HCCA
BP	GO:0098869	cellular oxidant detoxification	IEP	HCCA
BP	GO:0104004	cellular response to environmental stimulus	IEP	HCCA
MF	GO:0106019	phosphatidylinositol-4,5-bisphosphate phosphatase activity	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA
BP	GO:1901616	organic hydroxy compound catabolic process	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1902495	transmembrane transporter complex	IEP	HCCA
BP	GO:1902531	regulation of intracellular signal transduction	IEP	HCCA
BP	GO:1902532	negative regulation of intracellular signal transduction	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA
CC	GO:1990351	transporter complex	IEP	HCCA
BP	GO:1990748	cellular detoxification	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013766	Thioredoxin_domain	40	129

External Links

PLAZA 3.0 Dicots	AT5G39950

AT5G39950

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation