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  5. AT5G39980

AT5G39980


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0006617 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0006617_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G39980
Cluster HCCA: Cluster_135


Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0004516 nicotinate phosphoribosyltransferase activity IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
CC GO:0009528 plastid inner membrane IEP HCCA
CC GO:0009706 chloroplast inner membrane IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0010020 chloroplast fission IEP HCCA
BP GO:0010267 production of ta-siRNAs involved in RNA interference IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
BP GO:0019357 nicotinate nucleotide biosynthetic process IEP HCCA
BP GO:0019358 nicotinate nucleotide salvage IEP HCCA
BP GO:0019362 pyridine nucleotide metabolic process IEP HCCA
BP GO:0019363 pyridine nucleotide biosynthetic process IEP HCCA
BP GO:0019365 pyridine nucleotide salvage IEP HCCA
CC GO:0031969 chloroplast membrane IEP HCCA
BP GO:0043173 nucleotide salvage IEP HCCA
BP GO:0043572 plastid fission IEP HCCA
BP GO:0046497 nicotinate nucleotide metabolic process IEP HCCA
BP GO:0048285 organelle fission IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0072524 pyridine-containing compound metabolic process IEP HCCA
BP GO:0072525 pyridine-containing compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 399 442
IPR002885 Pentatricopeptide_repeat 258 303
IPR002885 Pentatricopeptide_repeat 153 201
IPR002885 Pentatricopeptide_repeat 577 602
IPR002885 Pentatricopeptide_repeat 538 566
IPR002885 Pentatricopeptide_repeat 471 497
IPR002885 Pentatricopeptide_repeat 226 256
IPR002885 Pentatricopeptide_repeat 328 377
PLAZA 3.0 Dicots AT5G39980