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  5. AT5G41020

AT5G41020


Description : myb family transcription factor


Gene families : OG_01_0002724 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002724_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G41020
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Zci_09146.1 No alias transcription termination factor (TTF1) 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_13309.1 No alias transcription termination factor (TTF1) 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000412 histone peptidyl-prolyl isomerization IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0001091 RNA polymerase II general transcription initiation factor binding IEP HCCA
MF GO:0001093 TFIIB-class transcription factor binding IEP HCCA
MF GO:0001098 basal transcription machinery binding IEP HCCA
MF GO:0001099 basal RNA polymerase II transcription machinery binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005778 peroxisomal membrane IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
CC GO:0005956 protein kinase CK2 complex IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007031 peroxisome organization IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016783 sulfurtransferase activity IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
CC GO:0030054 cell junction IEP HCCA
MF GO:0031071 cysteine desulfurase activity IEP HCCA
CC GO:0031903 microbody membrane IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0042753 positive regulation of circadian rhythm IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
MF GO:0070063 RNA polymerase binding IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA

No InterPro domains available for this sequence

PLAZA 3.0 Dicots AT5G41020