AT5G41190


Description : CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1) Zn-ribbon like (InterPro:IPR014881), D-site 20S pre-rRNA nuclease (InterPro:IPR017117); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).


Gene families : OG_01_0005876 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0005876_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G41190
Cluster HCCA: Cluster_252

Target Alias Description ECC score Gene Family Method Actions
Cre01.g031750 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g16460.1 No alias NOB1 pre-rRNA processing endonuclease involved in ITS1... 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_34320V3.1 No alias No annotation 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
BP GO:0000469 cleavage involved in rRNA processing IDA Interproscan
MF GO:0004521 endoribonuclease activity IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005737 cytoplasm IDA Interproscan
BP GO:0006364 rRNA processing IMP Interproscan
BP GO:0006606 protein import into nucleus RCA Interproscan
BP GO:0009553 embryo sac development IMP Interproscan
BP GO:0009555 pollen development IMP Interproscan
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0000175 3'-5'-exoribonuclease activity IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0000478 endonucleolytic cleavage involved in rRNA processing IEP HCCA
BP GO:0000741 karyogamy IEP HCCA
BP GO:0000957 mitochondrial RNA catabolic process IEP HCCA
BP GO:0000959 mitochondrial RNA metabolic process IEP HCCA
BP GO:0000963 mitochondrial RNA processing IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004532 exoribonuclease activity IEP HCCA
MF GO:0004534 5'-3' exoribonuclease activity IEP HCCA
MF GO:0004576 oligosaccharyl transferase activity IEP HCCA
MF GO:0004654 polyribonucleotide nucleotidyltransferase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004818 glutamate-tRNA ligase activity IEP HCCA
MF GO:0004824 lysine-tRNA ligase activity IEP HCCA
MF GO:0004826 phenylalanine-tRNA ligase activity IEP HCCA
MF GO:0004839 ubiquitin activating enzyme activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005829 cytosol IEP HCCA
BP GO:0006089 lactate metabolic process IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006312 mitotic recombination IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006430 lysyl-tRNA aminoacylation IEP HCCA
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP HCCA
BP GO:0006464 cellular protein modification process IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006520 cellular amino acid metabolic process IEP HCCA
BP GO:0006626 protein targeting to mitochondrion IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0006997 nucleus organization IEP HCCA
BP GO:0007006 mitochondrial membrane organization IEP HCCA
BP GO:0007007 inner mitochondrial membrane organization IEP HCCA
BP GO:0007140 male meiotic nuclear division IEP HCCA
BP GO:0007143 female meiotic nuclear division IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
MF GO:0008409 5'-3' exonuclease activity IEP HCCA
MF GO:0008469 histone-arginine N-methyltransferase activity IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP HCCA
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009303 rRNA transcription IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
CC GO:0009328 phenylalanine-tRNA ligase complex IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009438 methylglyoxal metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
BP GO:0009561 megagametogenesis IEP HCCA
BP GO:0009639 response to red or far red light IEP HCCA
BP GO:0009640 photomorphogenesis IEP HCCA
BP GO:0009756 carbohydrate mediated signaling IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0009845 seed germination IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0009933 meristem structural organization IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0010022 meristem determinacy IEP HCCA
BP GO:0010025 wax biosynthetic process IEP HCCA
BP GO:0010074 maintenance of meristem identity IEP HCCA
BP GO:0010077 maintenance of inflorescence meristem identity IEP HCCA
BP GO:0010162 seed dormancy process IEP HCCA
BP GO:0010166 wax metabolic process IEP HCCA
BP GO:0010182 sugar mediated signaling pathway IEP HCCA
BP GO:0010212 response to ionizing radiation IEP HCCA
BP GO:0010219 regulation of vernalization response IEP HCCA
BP GO:0010220 positive regulation of vernalization response IEP HCCA
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP HCCA
BP GO:0010467 gene expression IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0010582 floral meristem determinacy IEP HCCA
BP GO:0010586 miRNA metabolic process IEP HCCA
BP GO:0010587 miRNA catabolic process IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0016093 polyprenol metabolic process IEP HCCA
BP GO:0016094 polyprenol biosynthetic process IEP HCCA
MF GO:0016273 arginine N-methyltransferase activity IEP HCCA
MF GO:0016274 protein-arginine N-methyltransferase activity IEP HCCA
MF GO:0016277 [myelin basic protein]-arginine N-methyltransferase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0018195 peptidyl-arginine modification IEP HCCA
BP GO:0018216 peptidyl-arginine methylation IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione IEP HCCA
BP GO:0019348 dolichol metabolic process IEP HCCA
BP GO:0019408 dolichol biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0019827 stem cell population maintenance IEP HCCA
BP GO:0019915 lipid storage IEP HCCA
BP GO:0019919 peptidyl-arginine methylation, to asymmetrical-dimethyl arginine IEP HCCA
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0022611 dormancy process IEP HCCA
BP GO:0030154 cell differentiation IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031125 rRNA 3'-end processing IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0034661 ncRNA catabolic process IEP HCCA
BP GO:0034969 histone arginine methylation IEP HCCA
BP GO:0034970 histone H3-R2 methylation IEP HCCA
BP GO:0034971 histone H3-R17 methylation IEP HCCA
BP GO:0034972 histone H3-R26 methylation IEP HCCA
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA IEP HCCA
MF GO:0035241 protein-arginine omega-N monomethyltransferase activity IEP HCCA
MF GO:0035242 protein-arginine omega-N asymmetric methyltransferase activity IEP HCCA
BP GO:0035246 peptidyl-arginine N-methylation IEP HCCA
BP GO:0035247 peptidyl-arginine omega-N-methylation IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0042180 cellular ketone metabolic process IEP HCCA
BP GO:0042182 ketone catabolic process IEP HCCA
BP GO:0042991 obsolete transcription factor import into nucleus IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043628 ncRNA 3'-end processing IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044267 cellular protein metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0045039 protein insertion into mitochondrial inner membrane IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
BP GO:0046185 aldehyde catabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
BP GO:0048366 leaf development IEP HCCA
BP GO:0048532 anatomical structure arrangement IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048609 multicellular organismal reproductive process IEP HCCA
BP GO:0048825 cotyledon development IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0050826 response to freezing IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051204 protein insertion into mitochondrial membrane IEP HCCA
BP GO:0051205 protein insertion into membrane IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0051596 methylglyoxal catabolic process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0061727 methylglyoxal catabolic process to lactate IEP HCCA
BP GO:0070585 protein localization to mitochondrion IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0072655 establishment of protein localization to mitochondrion IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
BP GO:0090151 establishment of protein localization to mitochondrial membrane IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0098727 maintenance of cell number IEP HCCA
BP GO:0098781 ncRNA transcription IEP HCCA
BP GO:0140013 meiotic nuclear division IEP HCCA
BP GO:0140053 mitochondrial gene expression IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1900864 mitochondrial RNA modification IEP HCCA
BP GO:1900865 chloroplast RNA modification IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901570 fatty acid derivative biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR033411 Ribonuclease_PIN 48 134
IPR014881 NOB1_Zn-bd 452 522
PLAZA 3.0 Dicots AT5G41190