AT1G24250

Description : Paired amphipathic helix (PAH2) superfamily protein

Gene families : OG_01_0001236 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001236_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G24250
Cluster	HCCA: Cluster_5

Target	Alias	Description	ECC score	Gene Family Method
AT1G24200	No alias	Paired amphipathic helix (PAH2) superfamily protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G24220	No alias	paired amphipathic helix repeat-containing protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G27240	No alias	Paired amphipathic helix (PAH2) superfamily protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0004467	long-chain fatty acid-CoA ligase activity	IEP	HCCA
BP	GO:0006476	protein deacetylation	IEP	HCCA
BP	GO:0006863	purine nucleobase transport	IEP	HCCA
BP	GO:0009555	pollen development	IEP	HCCA
BP	GO:0009820	alkaloid metabolic process	IEP	HCCA
BP	GO:0009821	alkaloid biosynthetic process	IEP	HCCA
BP	GO:0010208	pollen wall assembly	IEP	HCCA
BP	GO:0010528	regulation of transposition	IEP	HCCA
BP	GO:0010529	negative regulation of transposition	IEP	HCCA
BP	GO:0010584	pollen exine formation	IEP	HCCA
BP	GO:0010927	cellular component assembly involved in morphogenesis	IEP	HCCA
MF	GO:0015645	fatty acid ligase activity	IEP	HCCA
BP	GO:0015851	nucleobase transport	IEP	HCCA
MF	GO:0016207	4-coumarate-CoA ligase activity	IEP	HCCA
BP	GO:0016575	histone deacetylation	IEP	HCCA
MF	GO:0016843	amine-lyase activity	IEP	HCCA
MF	GO:0016844	strictosidine synthase activity	IEP	HCCA
BP	GO:0019499	cyanide metabolic process	IEP	HCCA
BP	GO:0030638	polyketide metabolic process	IEP	HCCA
BP	GO:0030639	polyketide biosynthetic process	IEP	HCCA
BP	GO:0031056	regulation of histone modification	IEP	HCCA
BP	GO:0031057	negative regulation of histone modification	IEP	HCCA
BP	GO:0031058	positive regulation of histone modification	IEP	HCCA
BP	GO:0031060	regulation of histone methylation	IEP	HCCA
BP	GO:0031062	positive regulation of histone methylation	IEP	HCCA
BP	GO:0031401	positive regulation of protein modification process	IEP	HCCA
MF	GO:0031490	chromatin DNA binding	IEP	HCCA
MF	GO:0031956	medium-chain fatty acid-CoA ligase activity	IEP	HCCA
BP	GO:0035065	regulation of histone acetylation	IEP	HCCA
BP	GO:0035067	negative regulation of histone acetylation	IEP	HCCA
BP	GO:0035337	fatty-acyl-CoA metabolic process	IEP	HCCA
BP	GO:0035384	thioester biosynthetic process	IEP	HCCA
BP	GO:0035601	protein deacylation	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0046202	cyanide biosynthetic process	IEP	HCCA
BP	GO:0046949	fatty-acyl-CoA biosynthetic process	IEP	HCCA
BP	GO:0048229	gametophyte development	IEP	HCCA
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	HCCA
BP	GO:0048658	anther wall tapetum development	IEP	HCCA
BP	GO:0051570	regulation of histone H3-K9 methylation	IEP	HCCA
BP	GO:0051574	positive regulation of histone H3-K9 methylation	IEP	HCCA
BP	GO:0071616	acyl-CoA biosynthetic process	IEP	HCCA
BP	GO:0080110	sporopollenin biosynthetic process	IEP	HCCA
MF	GO:0090439	tetraketide alpha-pyrone synthase activity	IEP	HCCA
BP	GO:0098732	macromolecule deacylation	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
BP	GO:1900109	regulation of histone H3-K9 dimethylation	IEP	HCCA
BP	GO:1900111	positive regulation of histone H3-K9 dimethylation	IEP	HCCA
BP	GO:1901983	regulation of protein acetylation	IEP	HCCA
BP	GO:1901984	negative regulation of protein acetylation	IEP	HCCA
BP	GO:2000756	regulation of peptidyl-lysine acetylation	IEP	HCCA
BP	GO:2000757	negative regulation of peptidyl-lysine acetylation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003822	PAH	138	181
IPR003822	PAH	202	243

External Links

PLAZA 3.0 Dicots	AT1G24250

AT1G24250

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation