AT1G24260

Description : K-box region and MADS-box transcription factor family protein

Gene families : OG_01_0000131 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000131_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G24260
Cluster	HCCA: Cluster_196

Target	Alias	Description	ECC score	Gene Family Method	Actions
AT1G26310	No alias	K-box region and MADS-box transcription factor family protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G62165	No alias	AGAMOUS-like 42	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
BP	GO:0001708	cell fate specification	IMP	Interproscan
BP	GO:0001708	cell fate specification	RCA	Interproscan
BP	GO:0003002	regionalization	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IDA	Interproscan
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	TAS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	ISS	Interproscan
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009888	tissue development	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009908	flower development	TAS	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010093	specification of floral organ identity	IMP	Interproscan
BP	GO:0010093	specification of floral organ identity	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048367	shoot system development	None	Extended
BP	GO:0048437	floral organ development	None	Extended
BP	GO:0048440	carpel development	RCA	Interproscan
BP	GO:0048481	plant ovule development	IMP	Interproscan
BP	GO:0048481	plant ovule development	RCA	Interproscan
BP	GO:0048507	meristem development	RCA	Interproscan
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048731	system development	None	Extended
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048832	specification of plant organ number	None	Extended
BP	GO:0048833	specification of floral organ number	IMP	Interproscan
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090567	reproductive shoot system development	None	Extended
BP	GO:0090701	specification of plant organ identity	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	IEP	HCCA
BP	GO:0000904	cell morphogenesis involved in differentiation	IEP	HCCA
BP	GO:0001676	long-chain fatty acid metabolic process	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004144	diacylglycerol O-acyltransferase activity	IEP	HCCA
MF	GO:0004180	carboxypeptidase activity	IEP	HCCA
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	HCCA
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	HCCA
MF	GO:0004367	glycerol-3-phosphate dehydrogenase [NAD+] activity	IEP	HCCA
MF	GO:0004467	long-chain fatty acid-CoA ligase activity	IEP	HCCA
MF	GO:0004497	monooxygenase activity	IEP	HCCA
MF	GO:0004565	beta-galactosidase activity	IEP	HCCA
MF	GO:0004857	enzyme inhibitor activity	IEP	HCCA
MF	GO:0004860	protein kinase inhibitor activity	IEP	HCCA
MF	GO:0004861	cyclin-dependent protein serine/threonine kinase inhibitor activity	IEP	HCCA
MF	GO:0005496	steroid binding	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
BP	GO:0006072	glycerol-3-phosphate metabolic process	IEP	HCCA
BP	GO:0006629	lipid metabolic process	IEP	HCCA
BP	GO:0006631	fatty acid metabolic process	IEP	HCCA
BP	GO:0006633	fatty acid biosynthetic process	IEP	HCCA
MF	GO:0008142	oxysterol binding	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	HCCA
CC	GO:0009331	glycerol-3-phosphate dehydrogenase complex	IEP	HCCA
BP	GO:0009413	response to flooding	IEP	HCCA
BP	GO:0009653	anatomical structure morphogenesis	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0009739	response to gibberellin	IEP	HCCA
BP	GO:0009740	gibberellic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009826	unidimensional cell growth	IEP	HCCA
BP	GO:0009827	plant-type cell wall modification	IEP	HCCA
BP	GO:0009860	pollen tube growth	IEP	HCCA
BP	GO:0009886	post-embryonic animal morphogenesis	IEP	HCCA
BP	GO:0009900	dehiscence	IEP	HCCA
BP	GO:0009909	regulation of flower development	IEP	HCCA
BP	GO:0009911	positive regulation of flower development	IEP	HCCA
BP	GO:0009913	epidermal cell differentiation	IEP	HCCA
BP	GO:0009932	cell tip growth	IEP	HCCA
BP	GO:0009937	regulation of gibberellic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009938	negative regulation of gibberellic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009966	regulation of signal transduction	IEP	HCCA
BP	GO:0009968	negative regulation of signal transduction	IEP	HCCA
BP	GO:0010025	wax biosynthetic process	IEP	HCCA
BP	GO:0010047	fruit dehiscence	IEP	HCCA
BP	GO:0010048	vernalization response	IEP	HCCA
BP	GO:0010090	trichome morphogenesis	IEP	HCCA
BP	GO:0010091	trichome branching	IEP	HCCA
BP	GO:0010103	stomatal complex morphogenesis	IEP	HCCA
BP	GO:0010143	cutin biosynthetic process	IEP	HCCA
BP	GO:0010166	wax metabolic process	IEP	HCCA
BP	GO:0010187	negative regulation of seed germination	IEP	HCCA
BP	GO:0010229	inflorescence development	IEP	HCCA
BP	GO:0010321	regulation of vegetative phase change	IEP	HCCA
BP	GO:0010325	raffinose family oligosaccharide biosynthetic process	IEP	HCCA
BP	GO:0010476	gibberellin mediated signaling pathway	IEP	HCCA
BP	GO:0010646	regulation of cell communication	IEP	HCCA
BP	GO:0010648	negative regulation of cell communication	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015645	fatty acid ligase activity	IEP	HCCA
MF	GO:0016405	CoA-ligase activity	IEP	HCCA
MF	GO:0016411	acylglycerol O-acyltransferase activity	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
MF	GO:0016713	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen	IEP	HCCA
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	HCCA
MF	GO:0016878	acid-thiol ligase activity	IEP	HCCA
MF	GO:0016899	oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
MF	GO:0018685	alkane 1-monooxygenase activity	IEP	HCCA
MF	GO:0019210	kinase inhibitor activity	IEP	HCCA
MF	GO:0019825	oxygen binding	IEP	HCCA
BP	GO:0023051	regulation of signaling	IEP	HCCA
BP	GO:0023057	negative regulation of signaling	IEP	HCCA
MF	GO:0030291	protein serine/threonine kinase inhibitor activity	IEP	HCCA
BP	GO:0030855	epithelial cell differentiation	IEP	HCCA
MF	GO:0031219	levanase activity	IEP	HCCA
MF	GO:0031559	oxidosqualene cyclase activity	IEP	HCCA
MF	GO:0031957	very long-chain fatty acid-CoA ligase activity	IEP	HCCA
MF	GO:0032934	sterol binding	IEP	HCCA
MF	GO:0042299	lupeol synthase activity	IEP	HCCA
MF	GO:0042300	beta-amyrin synthase activity	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
BP	GO:0043446	cellular alkane metabolic process	IEP	HCCA
BP	GO:0043447	alkane biosynthetic process	IEP	HCCA
BP	GO:0043473	pigmentation	IEP	HCCA
BP	GO:0043476	pigment accumulation	IEP	HCCA
BP	GO:0043478	pigment accumulation in response to UV light	IEP	HCCA
BP	GO:0043479	pigment accumulation in tissues in response to UV light	IEP	HCCA
BP	GO:0043480	pigment accumulation in tissues	IEP	HCCA
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
MF	GO:0045551	cinnamyl-alcohol dehydrogenase activity	IEP	HCCA
MF	GO:0046577	long-chain-alcohol oxidase activity	IEP	HCCA
MF	GO:0047196	long-chain-alcohol O-fatty-acyltransferase activity	IEP	HCCA
MF	GO:0047952	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity	IEP	HCCA
BP	GO:0048441	petal development	IEP	HCCA
BP	GO:0048443	stamen development	IEP	HCCA
BP	GO:0048444	floral organ morphogenesis	IEP	HCCA
BP	GO:0048580	regulation of post-embryonic development	IEP	HCCA
BP	GO:0048581	negative regulation of post-embryonic development	IEP	HCCA
BP	GO:0048582	positive regulation of post-embryonic development	IEP	HCCA
BP	GO:0048588	developmental cell growth	IEP	HCCA
BP	GO:0048609	multicellular organismal reproductive process	IEP	HCCA
BP	GO:0048831	regulation of shoot system development	IEP	HCCA
BP	GO:0051093	negative regulation of developmental process	IEP	HCCA
BP	GO:0051094	positive regulation of developmental process	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051240	positive regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051241	negative regulation of multicellular organismal process	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA
BP	GO:0052646	alditol phosphate metabolic process	IEP	HCCA
MF	GO:0052722	fatty acid in-chain hydroxylase activity	IEP	HCCA
BP	GO:0060560	developmental growth involved in morphogenesis	IEP	HCCA
MF	GO:0070001	aspartic-type peptidase activity	IEP	HCCA
MF	GO:0070008	serine-type exopeptidase activity	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
MF	GO:0071771	aldehyde decarbonylase activity	IEP	HCCA
BP	GO:0080050	regulation of seed development	IEP	HCCA
BP	GO:0080051	cutin transport	IEP	HCCA
BP	GO:0080172	petal epidermis patterning	IEP	HCCA
BP	GO:0090626	plant epidermis morphogenesis	IEP	HCCA
BP	GO:0090697	post-embryonic plant organ morphogenesis	IEP	HCCA
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
BP	GO:1901568	fatty acid derivative metabolic process	IEP	HCCA
BP	GO:1901570	fatty acid derivative biosynthetic process	IEP	HCCA
BP	GO:2000026	regulation of multicellular organismal development	IEP	HCCA
BP	GO:2000033	regulation of seed dormancy process	IEP	HCCA
BP	GO:2000034	regulation of seed maturation	IEP	HCCA
BP	GO:2000038	regulation of stomatal complex development	IEP	HCCA
BP	GO:2000122	negative regulation of stomatal complex development	IEP	HCCA
BP	GO:2000241	regulation of reproductive process	IEP	HCCA
BP	GO:2000243	positive regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	10	57
IPR002487	TF_Kbox	92	174

External Links

PLAZA 3.0 Dicots	AT1G24260

AT1G24260

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation