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  5. AT5G43822

AT5G43822


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0006692 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0006692_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G43822
Cluster HCCA: Cluster_91


Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP HCCA
MF GO:0004312 fatty acid synthase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005675 transcription factor TFIIH holo complex IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006783 heme biosynthetic process IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008131 primary amine oxidase activity IEP HCCA
MF GO:0008143 poly(A) binding IEP HCCA
MF GO:0008327 methyl-CpG binding IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009648 photoperiodism IEP HCCA
MF GO:0010428 methyl-CpNpG binding IEP HCCA
MF GO:0010429 methyl-CpNpN binding IEP HCCA
BP GO:0010675 regulation of cellular carbohydrate metabolic process IEP HCCA
CC GO:0015030 Cajal body IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
CC GO:0030076 light-harvesting complex IEP HCCA
CC GO:0030089 phycobilisome IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
CC GO:0032806 carboxy-terminal domain protein kinase complex IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
BP GO:0043255 regulation of carbohydrate biosynthetic process IEP HCCA
BP GO:0043624 cellular protein complex disassembly IEP HCCA
BP GO:0048571 long-day photoperiodism IEP HCCA
BP GO:0051568 histone H3-K4 methylation IEP HCCA
MF GO:0070717 poly-purine tract binding IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
BP GO:0080091 regulation of raffinose metabolic process IEP HCCA
BP GO:0080188 gene silencing by RNA-directed DNA methylation IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
BP GO:0140458 pre-transcriptional gene silencing by RNA IEP HCCA
BP GO:1900088 regulation of inositol biosynthetic process IEP HCCA
BP GO:1900091 regulation of raffinose biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1902554 serine/threonine protein kinase complex IEP HCCA
CC GO:1902911 protein kinase complex IEP HCCA
BP GO:1902930 regulation of alcohol biosynthetic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR029159 CK2S 7 158
PLAZA 3.0 Dicots AT5G43822