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Description : Pectin lyase-like superfamily protein
Gene families : OG_01_0001871 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001871_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AT5G44840 | |
| Cluster | HCCA: Cluster_71 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT4G32370 | No alias | Pectin lyase-like superfamily protein | 0.03 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| AT4G32380 | No alias | Pectin lyase-like superfamily protein | 0.06 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| AT4G35670 | No alias | Pectin lyase-like superfamily protein | 0.03 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| AT5G44830 | No alias | Pectin lyase-like superfamily protein | 0.04 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004650 | polygalacturonase activity | ISS | Interproscan |
| CC | GO:0005576 | extracellular region | ISM | Interproscan |
| BP | GO:0005975 | carbohydrate metabolic process | ISS | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003840 | obsolete gamma-glutamyltransferase activity | IEP | HCCA |
| MF | GO:0005199 | structural constituent of cell wall | IEP | HCCA |
| MF | GO:0005345 | purine nucleobase transmembrane transporter activity | IEP | HCCA |
| BP | GO:0006863 | purine nucleobase transport | IEP | HCCA |
| BP | GO:0006885 | regulation of pH | IEP | HCCA |
| BP | GO:0007035 | vacuolar acidification | IEP | HCCA |
| BP | GO:0009698 | phenylpropanoid metabolic process | IEP | HCCA |
| BP | GO:0009699 | phenylpropanoid biosynthetic process | IEP | HCCA |
| BP | GO:0010023 | proanthocyanidin biosynthetic process | IEP | HCCA |
| BP | GO:0010231 | maintenance of seed dormancy | IEP | HCCA |
| MF | GO:0015205 | nucleobase transmembrane transporter activity | IEP | HCCA |
| BP | GO:0015851 | nucleobase transport | IEP | HCCA |
| MF | GO:0016837 | carbon-oxygen lyase activity, acting on polysaccharides | IEP | HCCA |
| BP | GO:0030004 | cellular monovalent inorganic cation homeostasis | IEP | HCCA |
| MF | GO:0030570 | pectate lyase activity | IEP | HCCA |
| BP | GO:0030641 | regulation of cellular pH | IEP | HCCA |
| BP | GO:0036294 | cellular response to decreased oxygen levels | IEP | HCCA |
| MF | GO:0042626 | ATPase-coupled transmembrane transporter activity | IEP | HCCA |
| BP | GO:0045851 | pH reduction | IEP | HCCA |
| MF | GO:0050284 | sinapate 1-glucosyltransferase activity | IEP | HCCA |
| BP | GO:0051452 | intracellular pH reduction | IEP | HCCA |
| BP | GO:0051453 | regulation of intracellular pH | IEP | HCCA |
| BP | GO:0055067 | monovalent inorganic cation homeostasis | IEP | HCCA |
| BP | GO:0060688 | regulation of morphogenesis of a branching structure | IEP | HCCA |
| BP | GO:0071453 | cellular response to oxygen levels | IEP | HCCA |
| BP | GO:0071456 | cellular response to hypoxia | IEP | HCCA |
| BP | GO:0097437 | maintenance of dormancy | IEP | HCCA |
| BP | GO:1905428 | regulation of plant organ formation | IEP | HCCA |
| BP | GO:2000032 | regulation of secondary shoot formation | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000743 | Glyco_hydro_28 | 55 | 366 |
| PLAZA 3.0 Dicots | AT5G44840 |